View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7712_low_4 (Length: 549)
Name: NF7712_low_4
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 128 - 536
Target Start/End: Complemental strand, 3045854 - 3045438
Alignment:
| Q |
128 |
gtgttgataaaatctcttgttgcatagta------ataataataacagcaacaacaactaaccagtctcgtggcctcattgttgattatcatcgactgga |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3045854 |
gtgttcataaaatctcttgttgcatagtagtaataataataataataataacaacaactaaccagtctcgtggcctcgttgttgattatcatcgactgga |
3045755 |
T |
|
| Q |
222 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaactctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3045754 |
attggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcgttcaccctttctttgaactctt |
3045655 |
T |
|
| Q |
321 |
gaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttcttcttatcatcatg |
420 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045654 |
gaactggaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttttataaactcatcatacttttccttcttcttatcatcatg |
3045555 |
T |
|
| Q |
421 |
aaacaaagc-ttttttacttcttctagaaatccaattccaaattcatgtgccatggtttcagcgatcggaagcttatgttgttgtggtagtttttattaa |
519 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045554 |
aaacaaagctttttttacttcttccagaaatccaattccaaattcatgtgccatggtttcagcgatcggaagcttatgttgttgtggtagtttttattaa |
3045455 |
T |
|
| Q |
520 |
gttagggtttctgatgt |
536 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3045454 |
gttagggtttctgatgt |
3045438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 3046235 - 3046139
Alignment:
| Q |
16 |
ctttccactaggtatgattgatgtaatgtcttctatgtaatggggttggatggagcatcaacatacgtgaagtacaataatcataataataactggcgga |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
3046235 |
ctttccactagttatgattgatgtaatgtcttctatgtaatggggt----tggagtatcagcatatgtcaagtacaataatcataataataactggcgga |
3046140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 200 - 402
Target Start/End: Original strand, 33468633 - 33468839
Alignment:
| Q |
200 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
299 |
Q |
| |
|
||||| || ||||| || |||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
33468633 |
ttgttcatcatcattgattggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctta |
33468732 |
T |
|
| Q |
300 |
ttcacccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcat |
395 |
Q |
| |
|
|||| ||||| |||||| | || |||||||||| |||| |||||| ||| | ||| |||||||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
33468733 |
ttcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcat |
33468832 |
T |
|
| Q |
396 |
acttttc |
402 |
Q |
| |
|
||||||| |
|
|
| T |
33468833 |
acttttc |
33468839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 408
Target Start/End: Complemental strand, 34604149 - 34603960
Alignment:
| Q |
220 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
318 |
Q |
| |
|
||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
|
|
| T |
34604149 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34604050 |
T |
|
| Q |
319 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
408 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
34604049 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34603960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 408
Target Start/End: Complemental strand, 34725426 - 34725237
Alignment:
| Q |
220 |
gaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcaccctt-ttttgaactc |
318 |
Q |
| |
|
||||||| ||| |||| |||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||| |||||| | |
|
|
| T |
34725426 |
gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt |
34725327 |
T |
|
| Q |
319 |
ttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
408 |
Q |
| |
|
||||||||||||| |||| |||||| |||| ||| |||||| ||| |||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
34725326 |
ttgaactggaagtctggtgattcgatgatcattcatca---gggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34725237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 203 - 475
Target Start/End: Original strand, 30865192 - 30865466
Alignment:
| Q |
203 |
ttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttc |
302 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| ||| || ||||| ||||| || ||| |
|
|
| T |
30865192 |
ttgatgatcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattc |
30865291 |
T |
|
| Q |
303 |
acccttt-tttgaactcttgaactggaagt---acgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatact |
398 |
Q |
| |
|
||| ||| || ||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
30865292 |
accttttgttagaattcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatact |
30865391 |
T |
|
| Q |
399 |
tttccttcttcttatcatcatgaaaca-aagcttttttacttcttctagaaatccaattccaaattcatgtgccatgg |
475 |
Q |
| |
|
|| | |||||||||||||||||| || ||||||||||| |||||||| |||||||| |||| | |||||||| |
|
|
| T |
30865392 |
ttcc---actcttatcatcatgaaacacaactttttttacttcctctagaaactcaattccagattcctttgccatgg |
30865466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 218 - 396
Target Start/End: Original strand, 38868786 - 38868965
Alignment:
| Q |
218 |
tggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcgttcacccttt-tttgaac |
316 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |||||| |
|
|
| T |
38868786 |
tggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacctcattcaccatttgtttgaat |
38868885 |
T |
|
| Q |
317 |
tcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
396 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
38868886 |
tcttgaactggaagtctgactcgatgatgatcattcatgcatctcttgaaatcatctatgtcttttacaaacttatcata |
38868965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 39046822 - 39046734
Alignment:
| Q |
209 |
atcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacct |
297 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||| ||||||||| |||||||| |
|
|
| T |
39046822 |
atcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctagaagtacct |
39046734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 396
Target Start/End: Original strand, 1206334 - 1206524
Alignment:
| Q |
200 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcccaaaattaaatatttatgccctttaagtacctcg |
299 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
1206334 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatgcc-tttaagtacctca |
1206426 |
T |
|
| Q |
300 |
ttcacccttt-tttgaactcttgaactggaagtacgattggatgatgattcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
396 |
Q |
| |
|
||| |||||| |||||| ||||||||| ||| || ||| |||| || |||||||||||||||||||||| ||||||||| | ||| |||||||| |
|
|
| T |
1206427 |
ttcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcacaaattcatcata |
1206524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University