View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_43 (Length: 247)
Name: NF7712_low_43
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 27180740 - 27180952
Alignment:
| Q |
5 |
tgctcgacgagaataatattggccttttnnnnnnnnnnncatgtcatgaaaaaactaaccaatgactcaatcaaattaatggttcaaaaggttattttat |
104 |
Q |
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| T |
27180740 |
tgctcgacgagaataatattggcctttttaaaaaaaaagcatgtcatgaaaaaactaaccaatgactcaatcaaattaatggttcaaaaggttattttat |
27180839 |
T |
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| Q |
105 |
atatcaaattagaataaaactcagaactcttgcagtaatgagtcatgcacttataagagattcaagatagcatcaaaataagacactgtatcagacccat |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27180840 |
atatcaaattagaatagaactcagaactcttgcagtaatgagacatgcacttataagagattcaagatagcatcaaaataagacactgtatcagacccat |
27180939 |
T |
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| Q |
205 |
cttacaaacacca |
217 |
Q |
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||||||||||||| |
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| T |
27180940 |
cttacaaacacca |
27180952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 22311084 - 22311010
Alignment:
| Q |
141 |
aatgagtcatgcac-ttataagagattcaagatagcatcaaaataagacactgtatcagacccatcttacaaaca |
214 |
Q |
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| T |
22311084 |
aatgactcatgcaccttataatagactcaagatagcatcaaaataagacattatatcaaacccatcttacaaaca |
22311010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 22311243 - 22311195
Alignment:
| Q |
44 |
catgtcatgaaaaaactaaccaatgactcaatcaaattaatggttcaaa |
92 |
Q |
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| T |
22311243 |
catgtcataaaaaaactaacaaatgactcattcaaattaatgattcaaa |
22311195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 1965391 - 1965432
Alignment:
| Q |
176 |
atcaaaataagacactgtatcagacccatcttacaaacacca |
217 |
Q |
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| T |
1965391 |
atcaaaataagacactatatcagacccatcttacaaacacca |
1965432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 1965229 - 1965259
Alignment:
| Q |
88 |
tcaaaaggttattttatatatcaaattagaa |
118 |
Q |
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| T |
1965229 |
tcaaaaggttattttatatatcaaattagaa |
1965259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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