View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_46 (Length: 239)
Name: NF7712_low_46
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 43295629 - 43295416
Alignment:
| Q |
12 |
cttaacttatacagagaatctaaaagaaggaaaattgtatgatatagctagtaccagtggggtcaccagctcaatcaacattagagtatgctcttaagtt |
111 |
Q |
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| T |
43295629 |
cttaacttatatagagaatctaaaagaaggaaaattgtatgatatagctagtaccagtggggtcaccagctcaatcaacattagagtatgctcttaagtt |
43295530 |
T |
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| Q |
112 |
gagttccttgaatataataaagaatgtgaagaac--aacttcccaacataatgtagtaggcaacacaattaactattgttcgatacctcgtgagatctag |
209 |
Q |
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| T |
43295529 |
gagttccttgaatataataaagaatgtgaagaacaaaacttcccaacataatgtagtaggcaacacaattaactattgttccatacctcgtgagatctag |
43295430 |
T |
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| Q |
210 |
gagagcgacaccat |
223 |
Q |
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| T |
43295429 |
gtgagcgacaccat |
43295416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 22435277 - 22435341
Alignment:
| Q |
24 |
agagaatctaaaagaaggaaaattgtatgatatagctagtaccagtggggtcaccagctcaatca |
88 |
Q |
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| T |
22435277 |
agagaatctaaaaaaaggaaaattatatgatagaactaatactagtggagtcaccagttcaatca |
22435341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 22435579 - 22435612
Alignment:
| Q |
101 |
gctcttaagttgagttccttgaatataataaaga |
134 |
Q |
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| T |
22435579 |
gctcttaagttgagttccttgaatataatgaaga |
22435612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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