View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_47 (Length: 234)
Name: NF7712_low_47
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 548475 - 548690
Alignment:
| Q |
1 |
atcttcactcacagcagcagcagcagcctcaactctcaaatcttcaattcttttccgtaattccaaaccttcaccatcccttgaatattggttcattata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
548475 |
atcttcactcacagcagcagcagcagcctcaactctcaaatcttcaattcttttccgtaattgcaaaccttcaccatcccttgaatattggttcattata |
548574 |
T |
|
| Q |
101 |
atctttataactcttgcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtactgcgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
548575 |
atctttataactcttgcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtgatgcag |
548674 |
T |
|
| Q |
201 |
cgttcattctctgctc |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
548675 |
cgttcattctctgctc |
548690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23424126 - 23423914
Alignment:
| Q |
1 |
atcttcactcacagcagcagcagcagcctcaactctcaaatcttcaattcttttccgtaattccaaaccttcaccatcccttgaatattggttcattata |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23424126 |
atcttcactcacagcagcag---cagcctcaactctcaaatcttcaattcttttccgtaattgcaaaccttcaccatcccttgaatattggttcattata |
23424030 |
T |
|
| Q |
101 |
atctttataactcttgcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtactgcgg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
23424029 |
atctttataactcttgcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtgttgctg |
23423930 |
T |
|
| Q |
201 |
cgttcattctctgctc |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
23423929 |
cgttcattctctgctc |
23423914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 894342 - 894405
Alignment:
| Q |
116 |
gcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttga |
179 |
Q |
| |
|
||||||||||||| ||| || |||||| |||||||||||| ||||||||||| ||||| |||| |
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| T |
894342 |
gcaacttcttctcttttcactatcccactttcatcatcaatctttggcctcacagccaccttga |
894405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 8294294 - 8294372
Alignment:
| Q |
116 |
gcaacttcttctccttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagta |
194 |
Q |
| |
|
|||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
8294294 |
gcaacttcctcttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagta |
8294372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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