View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_52 (Length: 227)
Name: NF7712_low_52
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 28753848 - 28754000
Alignment:
| Q |
57 |
aaattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
156 |
Q |
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| T |
28753848 |
aaattctctcattaataaaataaaggcgagttacgtacatgttttgatatgcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagc |
28753947 |
T |
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| Q |
157 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttc |
209 |
Q |
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| T |
28753948 |
agtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttc |
28754000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 28749840 - 28749981
Alignment:
| Q |
68 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
167 |
Q |
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|||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749840 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
28749939 |
T |
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| Q |
168 |
attggaagaaaccccacaaaaagctaaaggagaagaactttc |
209 |
Q |
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| T |
28749940 |
attggaagaaaccccacaaaaagctaaaggagaagaactttc |
28749981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 28739898 - 28740039
Alignment:
| Q |
68 |
ttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagcagtgaaaaacc |
167 |
Q |
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| T |
28739898 |
ttaataaaataaaggcgagtcacgtacttcctatgataggcttctagaccaaatgtggggaagtttgcaaatccacaagcatcaccagcagtgaaaaacc |
28739997 |
T |
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| Q |
168 |
attggaagaaaccccacaaaaagctaaaggagaagaactttc |
209 |
Q |
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| T |
28739998 |
attggaagaaaccccacaaaaagctaaaggagaagaactttc |
28740039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 39943066 - 39942915
Alignment:
| Q |
58 |
aattctctcgttaataaaataaaggcgagttacgtacatgttttgataggcttctagaccaaatgtggggaagtttgtaaatccacaagcatcaccagca |
157 |
Q |
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|||||| || ||||||||||||||||| || || ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
39943066 |
aattctatcattaataaaataaaggcgggtcacttacttcctttgataggcttctagaccaaatgtgggaaagtttgtaaatccacaagaatcaccagca |
39942967 |
T |
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| Q |
158 |
gtgaaaaaccattggaagaaaccccacaaaaagctaaaggagaagaactttc |
209 |
Q |
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| T |
39942966 |
gcgaaaaaccattggaagaaaccccacaagaagctgaaggagaagaactttc |
39942915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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