View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_8 (Length: 452)
Name: NF7712_low_8
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 48252098 - 48252525
Alignment:
| Q |
9 |
gaagaatattgccggaactgaatagaactgtattagtagcaagccaagttgatcttccttgctcatcatttgtttgttttgctgtatgtcttgttatatg |
108 |
Q |
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| T |
48252098 |
gaagaaaattgccggaactgaatagaactgtattagtagcaagccaagttgatcttccttgctcatcatttgtttgttttgctgtatgtcttgttatatg |
48252197 |
T |
|
| Q |
109 |
agaggcatttgtatccctttgatatagaatagaattcctcggtctctataaatatcaaccttgtattaatcaatttcattgttgaaataatgcagcaaat |
208 |
Q |
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| T |
48252198 |
agaggcatttgtatccctttgatatagaatagaattcctcggtctctataaatatcaaccttgtattaatcaatttcattgttcaaataatgcagcaaat |
48252297 |
T |
|
| Q |
209 |
cttatatatatgtttgtgattctgaatgtaaaccattcatatttttacttctatannnnnnnnnnnnncagagtgtatattccagaaaagaatatcctta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48252298 |
cttatatatatgtttgtgattctgaatgtaaaccattcatatttttacttctat--ggtgtgtgtgtgcagagtgtatattccagaaaagaatatcctta |
48252395 |
T |
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| Q |
309 |
attaaacacttgtctattttaatttgctgaatgttttgatacaaaagaaggccaaattgacaatttgtgagacatcttgtattgatagaaagtaagggtg |
408 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48252396 |
attaaacacctgtctattttaatttgctgaatgttttgatacaaaagaaggccaaattgacaatttgtgagacatcttgtattgatagaaagtaagggtg |
48252495 |
T |
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| Q |
409 |
ctaaagaaatgaatgataataaggagttta |
438 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48252496 |
ctaaagaaatgaatgataataaggagttta |
48252525 |
T |
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