View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_9 (Length: 430)
Name: NF7712_low_9
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 44 - 413
Target Start/End: Original strand, 42376502 - 42376871
Alignment:
| Q |
44 |
cccaacatacaaattgtttatatgataatatgaatagtgaatataatattcgattctatttataatgatctggatttgacagtcgtggtgtgggtatggc |
143 |
Q |
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| T |
42376502 |
cccaacctaccaattgcttatatgataatatgaatagtgaatataatattcgattctatttataaagatctggatttgacagtcgtggtgtgggtatggc |
42376601 |
T |
|
| Q |
144 |
aagcagaggtgtcttcttttttagaacaataccaaatttctccgacacctccagattttctccttgaggaactgtccaatcaaacaagtgcacaagggtg |
243 |
Q |
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| T |
42376602 |
aagcagaggtgtcttcttttttagaacaataccaaatttctccgacacctccagattttctccttgaggaactgtccaatcaaacaagtgcacaagggtg |
42376701 |
T |
|
| Q |
244 |
gctacaaagtacaaaaccgtcctctcagccattgctattccggcacaaatccttcttccagagccaaaagggaaatagttgaagtcattcccactataat |
343 |
Q |
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| T |
42376702 |
gctacaaagtacaaaaccgtcctctcagccattgctattccggcacaaatccttcttccagagccaaaagggaaatagttgaagtcattcccactataat |
42376801 |
T |
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| Q |
344 |
cccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtctctatg |
413 |
Q |
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| T |
42376802 |
cccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtctctatg |
42376871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 103 - 377
Target Start/End: Original strand, 42386957 - 42387231
Alignment:
| Q |
103 |
ttataatgatctggatttgacagtcgtggtgtgggtatggcaagcagaggtgtcttcttttttagaacaataccaaatttctccgacacctccagatttt |
202 |
Q |
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| T |
42386957 |
ttataaagatctggattagacagtcgtgttgtgggtatggcaagcaaaggcgtcttcttttttagaacgataccaaatttctctgatacatccatatttt |
42387056 |
T |
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| Q |
203 |
ctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagccattgctattccggcacaaatccttcttcc |
302 |
Q |
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| T |
42387057 |
ctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagacattgctattccggcacaaatccttcttcc |
42387156 |
T |
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| Q |
303 |
agagccaaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaa |
377 |
Q |
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| T |
42387157 |
agagccaaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttatatgatcaaa |
42387231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 62 - 413
Target Start/End: Original strand, 42393072 - 42393423
Alignment:
| Q |
62 |
tatatgataatatgaatagtgaatataatattcgattctatttataatgatctggatttgacagtcgtggtgtgggtatggcaagcagaggtgtcttctt |
161 |
Q |
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| T |
42393072 |
tatatggtaatatgaatagtgaatatagtatccaaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctt |
42393171 |
T |
|
| Q |
162 |
ttttagaacaataccaaatttctccgacacctccagattttctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaacc |
261 |
Q |
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||| |||| |||||| ||||||| | || |||| |||||||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
42393172 |
tttgagaatgataccatatttctctaatacatccaacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaaca |
42393271 |
T |
|
| Q |
262 |
gtcctctcagccattgctattccggcacaaatccttcttccagagccaaaagggaaatagttgaagtcattcccactataatcccatttaccatccaaga |
361 |
Q |
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| T |
42393272 |
ttcctctcagccattgctattccagcacatatccttcttccagaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaaga |
42393371 |
T |
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| Q |
362 |
accttgtaggatcaaattctagtgggttctcccaaacataagggtctctatg |
413 |
Q |
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||||||| |||||||||||||| || |||||||||| ||||||||||||| |
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| T |
42393372 |
accttgtcggatcaaattctagcggtttctcccaaatggaagggtctctatg |
42393423 |
T |
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