View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7713_low_11 (Length: 315)
Name: NF7713_low_11
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7713_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 32458627 - 32458743
Alignment:
| Q |
15 |
agtaacttcttaacgaccactaggctccacggatgacaaccgatggtaaattccactaactatgtaacattcatttagctttataagtcatgaatccctc |
114 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32458627 |
agtaacttcataacgaccactaagctccacggatgacaactgatggtaaattccactaactatgtaacattcatttagctttataagtcatgaatccctc |
32458726 |
T |
|
| Q |
115 |
aacctctgaatccccca |
131 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32458727 |
aacctctgaatccccca |
32458743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 32458961 - 32459124
Alignment:
| Q |
130 |
caatccttaaatcaccatgaaaataatgaggattgctttctatactctaatatttactcgacttttttgtcccagtaacaaaatgtcacccgcaaattgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||| | |||||||| |
|
|
| T |
32458961 |
caatccttaaatcaccatgaaaataatgaggattgctttcaatactctaacatttactcgacttttttctcctagtaacaaagtgtcactcacaaattgt |
32459060 |
T |
|
| Q |
230 |
aaatgcgcaaataaaagagnnnnnnnnnnnnnaacagcaacaaatacaactcgtttcattaataatgatgt |
300 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32459061 |
aaatgcacaaataaaagagttttttt-------acagcaacaaatacaactcgtttcattaataatgatgt |
32459124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University