View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7713_low_12 (Length: 302)

Name: NF7713_low_12
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7713_low_12
NF7713_low_12
[»] chr2 (5 HSPs)
chr2 (5-287)||(11849829-11850111)
chr2 (5-287)||(11845100-11845382)
chr2 (207-276)||(11853031-11853100)
chr2 (199-287)||(2015260-2015348)
chr2 (31-75)||(718434-718478)
[»] chr3 (9 HSPs)
chr3 (29-86)||(40598037-40598094)
chr3 (29-86)||(40598097-40598154)
chr3 (200-287)||(40591294-40591381)
chr3 (208-287)||(40568388-40568467)
chr3 (29-69)||(40597994-40598034)
chr3 (199-257)||(40597806-40597864)
chr3 (199-287)||(40572989-40573077)
chr3 (199-287)||(40579446-40579534)
chr3 (215-287)||(40601944-40602016)
[»] chr8 (1 HSPs)
chr8 (33-74)||(36870911-36870952)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 11850111 - 11849829
Alignment:
Q  5 aaatccgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaa 104  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850111 aaatctgctaattttggcctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaa 11850012  T
Q  105 ataatgctccggcgatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaatactcaaaaaggtcaccatt 204  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11850011 ataatgctccagcaatttccgtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaatactgaaaaaggtcaccatt 11849912  T
Q  205 aggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11849911 aggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgattt 11849829  T

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Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 11845382 - 11845100
Alignment:
Q  5 aaatccgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaa 104  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11845382 aaatctgctaattttgccctatacttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagtaaa 11845283  T
Q  105 ataatgctccggcgatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaatactcaaaaaggtcaccatt 204  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||| |||||||| ||||||    
T  11845282 ataatgctccggcgatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtcctcgttttgggcatgcaaatactgaaaaaggttaccatt 11845183  T
Q  205 aggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11845182 aggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgattt 11845100  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 11853100 - 11853031
Alignment:
Q  207 gaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttct 276  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||| ||||    
T  11853100 gaatgaattcataaataagcaatggaatatttgtctccaaacaacatcctaatatctagaccacaattct 11853031  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 2015260 - 2015348
Alignment:
Q  199 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    |||||| ||||||||||| |||||||| || |||| ||||||||| |||||||| || || | ||  ||||||||||||| ||||||||    
T  2015260 accattgggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgattt 2015348  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 718478 - 718434
Alignment:
Q  31 ttcatcaagtagtatatttgtagatttgatatctctatgataaat 75  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  718478 ttcatcaagtagtatattggtagctttgatatccctatgataaat 718434  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 40598094 - 40598037
Alignment:
Q  29 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598094 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598037  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 40598154 - 40598097
Alignment:
Q  29 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 86  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598154 ttttcatctagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598097  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 40591381 - 40591294
Alignment:
Q  200 ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || ||    ||||||||||||| ||||||||    
T  40591381 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattt 40591294  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 40568467 - 40568388
Alignment:
Q  208 aatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| || || | ||  ||||||||||||| ||||||||    
T  40568467 aatgaattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgattt 40568388  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 40598034 - 40597994
Alignment:
Q  29 ttttcatcaagtagtatatttgtagatttgatatctctatg 69  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40598034 ttttcatcaagtagtatatttgtagatttgacatctctatg 40597994  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 40597864 - 40597806
Alignment:
Q  199 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatccta 257  Q
    |||||| ||||| |||||||||||||||||||||| |||||| || |||||||| ||||    
T  40597864 accattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaaccta 40597806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 40573077 - 40572989
Alignment:
Q  199 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    |||||| ||||| |||||||| ||||  || |||| ||||||||| |||||||| || || ||||  ||||||||||||| ||||||||    
T  40573077 accattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgattt 40572989  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 40579534 - 40579446
Alignment:
Q  199 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||||| |||||||| || || ||||  |||||||||||||  |||||||    
T  40579534 accattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgattt 40579446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 40602016 - 40601944
Alignment:
Q  215 tcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgattt 287  Q
    ||||||||||||||||||| |||||| || ||||| || || || | ||| ||||||||||||| ||||||||    
T  40602016 tcataaacaagcaatggaacttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgattt 40601944  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 36870911 - 36870952
Alignment:
Q  33 catcaagtagtatatttgtagatttgatatctctatgataaa 74  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  36870911 catcaagtagtatattggtagctttgatatctctgtgataaa 36870952  T

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