View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7713_low_14 (Length: 278)
Name: NF7713_low_14
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7713_low_14 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 41276 - 41127
Alignment:
| Q |
3 |
gcactaataaactatttgagcatgtgaaattcttcattctcacagcgatgctgaaaaggtcatctctactctagctcaacactccactgacttacgcgaa |
102 |
Q |
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| T |
41276 |
gcactaataaactatttcagcatgcgaaattattcactctcacagcgatgctgaaaaggtcatctctactctggctcaacactcccctgacttacgcgaa |
41177 |
T |
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| Q |
103 |
agaataatcctcaaaaaacaagcatctcgattgagctcaaggctgagagc |
152 |
Q |
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| T |
41176 |
agaataatcctcataaaacaagcatcccggttgagctcaaggctgagagc |
41127 |
T |
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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 20467280 - 20467170
Alignment:
| Q |
153 |
ttgttgcttgatgaagattatgacaggtatgttgaaaaatttcagtccaaaaaggatatttctcctcaattttattgctttttatgggatatagattcta |
252 |
Q |
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||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||| || | ||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
20467280 |
ttgtttcttgatgaagattatgacatgtatattgaaaaatttgagtccaaaaagaatgtatctcctcaattttattgctctttgtgggatatagaatcta |
20467181 |
T |
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| Q |
253 |
tgggttttgat |
263 |
Q |
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| T |
20467180 |
tgggttttgat |
20467170 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 21205748 - 21205823
Alignment:
| Q |
190 |
aatttcagtccaaaaaggatatttctcctcaa--ttttattgctttttatgggatatagattctatgggttttgat |
263 |
Q |
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| T |
21205748 |
aatttcagtctaagaaagatgtttatcctcaagattttattgctcattatgggatatagaatctatgggttttgat |
21205823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 21215564 - 21215639
Alignment:
| Q |
190 |
aatttcagtccaaaaaggatatttctcctcaa--ttttattgctttttatgggatatagattctatgggttttgat |
263 |
Q |
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|||||||||| || || ||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||||| |
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| T |
21215564 |
aatttcagtctaagaaagatgtttatcctcaagattttattgctcattatgggatatagaatctatgggttttgat |
21215639 |
T |
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