View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7713_low_16 (Length: 253)

Name: NF7713_low_16
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7713_low_16
NF7713_low_16
[»] chr6 (5 HSPs)
chr6 (7-237)||(15866876-15867106)
chr6 (40-237)||(33867761-33867958)
chr6 (102-237)||(14619319-14619456)
chr6 (7-104)||(33866401-33866498)
chr6 (102-192)||(24546234-24546324)
[»] chr1 (3 HSPs)
chr1 (7-237)||(3283109-3283339)
chr1 (7-237)||(9310714-9310944)
chr1 (125-223)||(5926011-5926109)
[»] chr3 (1 HSPs)
chr3 (66-190)||(6789971-6790095)
[»] scaffold0251 (1 HSPs)
scaffold0251 (61-192)||(4897-5028)
[»] chr7 (2 HSPs)
chr7 (69-223)||(21632694-21632847)
chr7 (125-187)||(6686987-6687049)
[»] chr4 (1 HSPs)
chr4 (66-220)||(23566096-23566250)
[»] chr5 (3 HSPs)
chr5 (125-194)||(25075858-25075927)
chr5 (125-194)||(25133827-25133896)
chr5 (70-190)||(33688459-33688579)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 15866876 - 15867106
Alignment:
Q  7 tcgaagaatatgacgattctgttagtgataaaattcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttgggcagttt 106  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15866876 tcgatgaagatgacgattctgttagtgatgaaattcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttt 15866975  T
Q  107 tgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtactcgttgattct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15866976 tgattctccaattgttccggtttctactccttcaatcgaaccaaaatttgatggattctccgtcaaaattggtgagatttcatgcgtattcgttgattct 15867075  T
Q  207 tgcaagaacatcgtcaattttgacgattctg 237  Q
    |||||||||||||||||||||||||||||||    
T  15867076 tgcaagaacatcgtcaattttgacgattctg 15867106  T

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Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 33867761 - 33867958
Alignment:
Q  40 ttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33867761 ttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttttgattctccaattgttccggtttctactccttc 33867860  T
Q  140 aatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtactcgttgattcttgcaagaacatcgtcaattttgacgattctg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33867861 aatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtattcgttgattcttgcaagaacatcgtcaattttgacgattctg 33867958  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 14619319 - 14619456
Alignment:
Q  102 agttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaa-ttggtg-agatttc-atgcgtactcg 198  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| ||| |||    
T  14619319 agtttcgagtctccaattgttccggattctactccttcaatcgaaccaaaattcgatgaattctccgtcaaaatttgatgaagatttcgatg-gtattcg 14619417  T
Q  199 ttgattcttgcaagaacatcgtcaattttgacgattctg 237  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  14619418 ttgattcttgcaagaacatcgtcgattgtgacgattctg 14619456  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 33866401 - 33866498
Alignment:
Q  7 tcgaagaatatgacgattctgttagtgataaaattcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttgggcagt 104  Q
    |||| ||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  33866401 tcgatgaagatgacgattctgttagtgatgaagttcttgtggtttctgcaccaattcttgaaacttcagcctctcacgattacatctttttcggcagt 33866498  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 24546234 - 24546324
Alignment:
Q  102 agttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcg 192  Q
    ||||| || |||||||||   ||| |||||| ||||||| |||||| |||||||| |||||||||| |||| |||||||||||||| ||||    
T  24546234 agtttcgagtctccaattcaaccgatttctaatccttcagtcgaacaaaaattcgttggattctccatcaagattggtgagatttcttgcg 24546324  T

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Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 3283109 - 3283339
Alignment:
Q  7 tcgaagaatatgacgattctgttagtgataaaattcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttgggcagttt 106  Q
    |||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3283109 tcgatgaagatgacgattctgttagtgatgaagttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttt 3283208  T
Q  107 tgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtactcgttgattct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3283209 tgattctccaattgttccggtttctactccttcaatcgaaccaaaatttgatggattctccgtcaaaattggtgagatttcatgcgtattcgttgattct 3283308  T
Q  207 tgcaagaacatcgtcaattttgacgattctg 237  Q
    |||||||||||||||||||||||||||||||    
T  3283309 tgcaagaacatcgtcaattttgacgattctg 3283339  T

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Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 9310714 - 9310944
Alignment:
Q  7 tcgaagaatatgacgattctgttagtgataaaattcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttgggcagttt 106  Q
    |||| ||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9310714 tcgatgaagatgacgattttgttagtgatgaagttcttgcggtttctgcaccaattcttgaaacttcagcctctcacgattgcatctttttcggcagttt 9310813  T
Q  107 tgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtactcgttgattct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9310814 tgattctccaattgttccggtttctactccttcaatcgaaccaaaatttgatggattctccgtcaaaattggtgagatttcatgcgtattcgttgattct 9310913  T
Q  207 tgcaagaacatcgtcaattttgacgattctg 237  Q
    |||||||||||||||||||||||||||||||    
T  9310914 tgcaagaacatcgtcaattttgacgattctg 9310944  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 5926109 - 5926011
Alignment:
Q  125 ggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgtactcgttgattcttgcaagaacatcgtcaa 223  Q
    |||||| | ||||||||||||||||||||| |||||| | ||| |||| ||||||||  ||||||| || ||||||||||||||||||||| |||||||    
T  5926109 ggtttcaaatccttcaatcgaaccaaaatttgatggaatgtccatcaagattggtgatttttcatgtgttctcgttgattcttgcaagaacctcgtcaa 5926011  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 6789971 - 6790095
Alignment:
Q  66 gaaacttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattct 165  Q
    ||||||||| | ||||||||| ||||| |||| |||||||| || |||||||||  ||||||||| ||||||  |||||||||| |||| ||||||||||    
T  6789971 gaaacttcatcttctcacgatcgcatcgttttcggcagtttcgagtctccaattactccggtttcaactcctgtaatcgaaccagaatttgatggattct 6790070  T
Q  166 ccgtcaaaattggtgagatttcatg 190  Q
    |  |||| ||||| |||||||||||    
T  6790071 cgatcaagattggggagatttcatg 6790095  T

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Target: scaffold0251 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 4897 - 5028
Alignment:
Q  61 ttcttgaaacttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatgg 160  Q
    |||| |||| |||| | |||||||||   ||| |||| |||| ||| |||||||| ||  |||||||||| | |||||  ||||||||||||||||||||    
T  4897 ttctggaaaattcaacttctcacgatcctatccttttcggcattttcgattctccgatcattccggtttcaaatcctttgatcgaaccaaaattcgatgg 4996  T
Q  161 attctccgtcaaaattggtgagatttcatgcg 192  Q
    ||||||| ||||||||||||||||||| ||||    
T  4997 attctccatcaaaattggtgagatttcttgcg 5028  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 21632847 - 21632694
Alignment:
Q  69 acttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccg 168  Q
    |||||| | ||||| |||||| || |||| ||||||||||||||||||||  | ||||||||||  | ||||||| |||||||||| |||||||| | |     
T  21632847 acttcaacttctcaagattgcgtccttttcggcagttttgattctccaatcataccggtttctaacctttcaatcaaaccaaaatttgatggatt-ttca 21632749  T
Q  169 tcaaaattggtgagatttcatgcgtactcgttgattcttgcaagaacatcgtcaa 223  Q
    |||| |||||||||||||| |||||| |||| ||| |||||   |||||||||||    
T  21632748 tcaagattggtgagatttcttgcgtaatcgtcgatccttgctgcaacatcgtcaa 21632694  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 6687049 - 6686987
Alignment:
Q  125 ggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttc 187  Q
    |||||| | |||||| ||||||||| |||| |||||||||||| |||| ||||||||||||||    
T  6687049 ggtttcaaatccttccatcgaaccagaatttgatggattctccatcaagattggtgagatttc 6686987  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 23566250 - 23566096
Alignment:
Q  66 gaaacttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattct 165  Q
    ||||||||| | ||||| ||| |||||||||| |||||||| || |||||||||  ||| ||||| |||| |  ||||| |||| |||| ||||||||||    
T  23566250 gaaacttcatcttctcaagatcgcatcttttttggcagtttcgagtctccaattactccagtttcaactcatgtaatcgcaccagaatttgatggattct 23566151  T
Q  166 ccgtcaaaattggtgagatttcatgcgtactcgttgattcttgcaagaacatcgt 220  Q
    || |||| ||||| ||||||||||| || || |||| | ||||||  ||||||||    
T  23566150 ccatcaagattggggagatttcatgtgttcttgttgctccttgcagcaacatcgt 23566096  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 25075927 - 25075858
Alignment:
Q  125 ggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgta 194  Q
    |||||||| |||||||||| ||||||| ||||||||||||||| |||| |||||||||||||| ||||||    
T  25075927 ggtttctaatccttcaatcaaaccaaagttcgatggattctccatcaagattggtgagatttcttgcgta 25075858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 25133896 - 25133827
Alignment:
Q  125 ggtttctactccttcaatcgaaccaaaattcgatggattctccgtcaaaattggtgagatttcatgcgta 194  Q
    |||||||| |||||||||| ||||||| ||||||||||||||| |||| |||||||||||||| ||||||    
T  25133896 ggtttctaatccttcaatcaaaccaaagttcgatggattctccatcaagattggtgagatttcttgcgta 25133827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 33688459 - 33688579
Alignment:
Q  70 cttcagcctctcacgattgcatctttttgggcagttttgattctccaattgttccggtttctactccttcaatcgaaccaaaattcgatggattctccgt 169  Q
    ||||||| |||||||||  |||  |||| |||||||| || |||||||||  || | |||||| ||||| |||| ||||| |||| |||||||||||| |    
T  33688459 cttcagcttctcacgatcccattgtttttggcagtttcgagtctccaattactctgatttctaatcctttaatcaaaccagaatttgatggattctccat 33688558  T
Q  170 caaaattggtgagatttcatg 190  Q
    ||||||||| || ||||||||    
T  33688559 caaaattggggaaatttcatg 33688579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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