View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7713_low_4 (Length: 407)

Name: NF7713_low_4
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7713_low_4
NF7713_low_4
[»] chr1 (12 HSPs)
chr1 (143-385)||(39199519-39199760)
chr1 (1-85)||(39199817-39199907)
chr1 (1-85)||(10136285-10136371)
chr1 (345-407)||(39199388-39199450)
chr1 (1-75)||(16648690-16648766)
chr1 (1-75)||(19798055-19798131)
chr1 (1-85)||(38622149-38622235)
chr1 (11-85)||(25844726-25844802)
chr1 (13-85)||(39586131-39586202)
chr1 (1-85)||(12260936-12261021)
chr1 (13-85)||(16036578-16036652)
chr1 (1-83)||(51040573-51040657)
[»] chr6 (20 HSPs)
chr6 (172-379)||(16864623-16864831)
chr6 (1-85)||(20747347-20747433)
chr6 (345-407)||(16864902-16864964)
chr6 (12-85)||(2699165-2699240)
chr6 (1-85)||(16835212-16835298)
chr6 (1-85)||(17963608-17963694)
chr6 (1-85)||(25313523-25313609)
chr6 (1-85)||(26201017-26201103)
chr6 (11-85)||(19994434-19994510)
chr6 (1-85)||(11612953-11613039)
chr6 (1-75)||(11533761-11533837)
chr6 (1-75)||(11559271-11559347)
chr6 (1-85)||(6406910-6406996)
chr6 (1-85)||(11569742-11569827)
chr6 (14-85)||(12689942-12690014)
chr6 (1-75)||(5856945-5857021)
chr6 (6-50)||(14509942-14509986)
chr6 (1-85)||(17600340-17600423)
chr6 (13-85)||(17914564-17914638)
chr6 (6-79)||(22694439-22694514)
[»] chr2 (23 HSPs)
chr2 (1-85)||(25496434-25496520)
chr2 (1-85)||(19896910-19896994)
chr2 (1-85)||(18345376-18345462)
chr2 (1-74)||(19891568-19891641)
chr2 (1-78)||(12797889-12797968)
chr2 (11-85)||(17968014-17968089)
chr2 (1-57)||(34495186-34495242)
chr2 (13-85)||(42925726-42925798)
chr2 (1-85)||(24537073-24537159)
chr2 (1-85)||(25477339-25477425)
chr2 (1-75)||(25637825-25637900)
chr2 (6-85)||(40846632-40846713)
chr2 (11-85)||(30651884-30651960)
chr2 (1-85)||(9179778-9179863)
chr2 (1-85)||(9184469-9184554)
chr2 (1-73)||(29678638-29678712)
chr2 (1-71)||(12361209-12361279)
chr2 (11-74)||(17974411-17974476)
chr2 (6-75)||(15446342-15446414)
chr2 (13-85)||(31329034-31329108)
chr2 (13-85)||(31335755-31335829)
chr2 (38-85)||(32080374-32080423)
chr2 (53-85)||(1934059-1934091)
[»] chr8 (16 HSPs)
chr8 (6-85)||(15950622-15950703)
chr8 (1-85)||(28559166-28559252)
chr8 (1-85)||(44924971-44925057)
chr8 (1-85)||(2966545-2966631)
chr8 (1-85)||(26780064-26780150)
chr8 (1-75)||(18875445-18875521)
chr8 (1-76)||(33100548-33100624)
chr8 (1-74)||(38181343-38181418)
chr8 (1-83)||(28564347-28564431)
chr8 (11-85)||(40124944-40125020)
chr8 (33-83)||(5884889-5884939)
chr8 (1-75)||(33417490-33417566)
chr8 (1-75)||(23547671-23547740)
chr8 (1-75)||(1808411-1808487)
chr8 (32-85)||(17021247-17021301)
chr8 (32-85)||(17551684-17551738)
[»] chr3 (20 HSPs)
chr3 (1-83)||(55432187-55432269)
chr3 (1-85)||(7570265-7570351)
chr3 (1-85)||(14437740-14437826)
chr3 (1-85)||(18472966-18473052)
chr3 (1-85)||(20520921-20521007)
chr3 (16-85)||(20175368-20175436)
chr3 (1-83)||(55326737-55326821)
chr3 (1-85)||(27709891-27709974)
chr3 (34-85)||(7860701-7860754)
chr3 (11-85)||(23660539-23660615)
chr3 (11-85)||(23665171-23665247)
chr3 (1-70)||(39774890-39774961)
chr3 (16-83)||(12970860-12970929)
chr3 (18-85)||(2206881-2206946)
chr3 (16-85)||(12964934-12965004)
chr3 (1-85)||(757414-757499)
chr3 (1-85)||(46964973-46965058)
chr3 (13-75)||(3656317-3656381)
chr3 (14-80)||(29351200-29351268)
chr3 (1-57)||(18468172-18468228)
[»] chr7 (15 HSPs)
chr7 (1-85)||(12181802-12181888)
chr7 (1-75)||(3046534-3046610)
chr7 (1-77)||(27246606-27246682)
chr7 (1-85)||(12256982-12257067)
chr7 (6-85)||(13313364-13313445)
chr7 (11-85)||(4931193-4931269)
chr7 (6-71)||(6590079-6590144)
chr7 (1-66)||(16373308-16373373)
chr7 (1-83)||(26342167-26342251)
chr7 (1-85)||(42625628-42625719)
chr7 (1-56)||(12800350-12800405)
chr7 (6-85)||(10392139-10392220)
chr7 (14-83)||(26286210-26286281)
chr7 (1-73)||(21672165-21672239)
chr7 (1-75)||(23247618-23247694)
[»] chr5 (17 HSPs)
chr5 (1-85)||(10759411-10759497)
chr5 (1-85)||(6154482-6154568)
chr5 (1-85)||(7452715-7452801)
chr5 (1-85)||(26668238-26668324)
chr5 (1-85)||(26939835-26939921)
chr5 (1-85)||(37646105-37646193)
chr5 (1-75)||(40148803-40148879)
chr5 (14-83)||(6511655-6511726)
chr5 (1-85)||(12104014-12104100)
chr5 (1-85)||(37247849-37247935)
chr5 (1-85)||(37536987-37537074)
chr5 (1-85)||(29167023-29167109)
chr5 (14-85)||(36430491-36430564)
chr5 (11-85)||(36424608-36424684)
chr5 (34-67)||(15149659-15149692)
chr5 (53-85)||(9725824-9725856)
chr5 (15-72)||(20180216-20180275)
[»] chr4 (27 HSPs)
chr4 (1-85)||(13064860-13064946)
chr4 (1-85)||(55252604-55252690)
chr4 (1-85)||(33462407-33462490)
chr4 (1-85)||(8694673-8694759)
chr4 (1-85)||(16422006-16422092)
chr4 (1-85)||(51698889-51698975)
chr4 (1-75)||(5925857-5925931)
chr4 (1-75)||(27183195-27183269)
chr4 (17-85)||(2820768-2820838)
chr4 (1-85)||(12822960-12823046)
chr4 (13-85)||(19102938-19103012)
chr4 (13-85)||(19107550-19107624)
chr4 (1-85)||(31728416-31728501)
chr4 (1-73)||(33468064-33468138)
chr4 (6-85)||(32081215-32081296)
chr4 (11-85)||(31274484-31274560)
chr4 (11-85)||(37258913-37258989)
chr4 (11-85)||(37263613-37263689)
chr4 (1-74)||(6943744-6943819)
chr4 (12-77)||(29349263-29349330)
chr4 (314-369)||(1283410-1283465)
chr4 (1-85)||(13060426-13060512)
chr4 (1-85)||(32220614-32220700)
chr4 (14-67)||(40408920-40408975)
chr4 (11-75)||(5270482-5270548)
chr4 (53-85)||(8029385-8029417)
chr4 (1-81)||(31766832-31766914)
[»] scaffold0352 (1 HSPs)
scaffold0352 (1-85)||(8069-8155)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-71)||(4932-5002)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-85)||(5034-5110)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-85)||(6192-6278)
[»] scaffold0054 (2 HSPs)
scaffold0054 (13-85)||(26413-26487)
scaffold0054 (17-73)||(30153-30211)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 143 - 385
Target Start/End: Complemental strand, 39199760 - 39199519
Alignment:
Q  143 cttcccacatcacaccaatgttccaacattatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccgctttagatgatatgaagt 242  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39199760 cttcccacatcacaccaatgttccaacattatcaagaatcaccatcacgttttaatgatgtctttaatctttgtat-gaccgctttagatgatatgaagt 39199662  T
Q  243 gtttcttctagcacttttttaagcttgcggcaaattaaggttatcttcataggaaaggcacccatgaagcaactataaccctttagagttcttaagttat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39199661 gtttcttctagcacttttttaagcttgcggcaaattaaggttatcttcataggaaaggcacccatgaagcaactataaccctttagagttcttaagttat 39199562  T
Q  343 gttagcaatatcatacaatgcatcagaaaaggattatggttaa 385  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  39199561 gttagcaataacatacaatgcatcagaaaaggattatggttaa 39199519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 39199907 - 39199817
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaa----acactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||||||||||||||||||||||||||    ||||||||||  | |||||||||||||||||||||||||||||||||    
T  39199907 tatcattattaagtatttaaaagtaaatactgcaatttaaacacacactattaatgtgtgtgttctattttatgtgggacctccacactct 39199817  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10136285 - 10136371
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  10136285 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 10136371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 39199450 - 39199388
Alignment:
Q  345 tagcaatatcatacaatgcatcagaaaaggattatggttaacaaatctaatcataataacaaa 407  Q
    ||||||||||||||| |||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  39199450 tagcaatatcatacagtgcatccgaagaggatgatggtgaacaaatctaatcataataacaaa 39199388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16648766 - 16648690
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||||||    
T  16648766 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacc 16648690  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19798131 - 19798055
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||  | ||||||||||||||||||||    
T  19798131 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgcgagttctattttatgtgggacc 19798055  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38622149 - 38622235
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||| |||| ||||||| ||||  |||||||||| ||||||||||| ||||||||  |||||||||||||||||||  |||||||||    
T  38622149 tatcattatcaagtattcaaaatcaaatactgcattttaaacactactaatatgtgagttctattttatgtgggactcccacactct 38622235  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 25844726 - 25844802
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  25844726 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 25844802  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 39586202 - 39586131
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||| ||||||   | ||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  39586202 gtatttaaaattaaatatcactatttaaaca-tattaatgtttgttctattttatgtgggacctccacactct 39586131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12260936 - 12261021
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  | |||||||||||| ||||   ||||||||||||||||||||||| |||||||||    
T  12260936 tatcattatcaagtatttaaaattaaataccactatttaaacactactaatgagtgtgttctattttatgtgggacc-ccacactct 12261021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 16036578 - 16036652
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||  |||||||  | |||||||||||| |||| ||||  |||||||||||||||||||||||||||||    
T  16036578 gtatttaaatttaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactct 16036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51040657 - 51040573
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacact 83  Q
    |||| |||| |||||||||||| ||||||   |||||||||||||| |||  | |||||||||||| |||||||||  |||||||    
T  51040657 tatcattatcaagtatttaaaattaaataacacaatttaaacactactaatgtgtgtgttctatttcatgtgggactcccacact 51040573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 172 - 379
Target Start/End: Original strand, 16864623 - 16864831
Alignment:
Q  172 tatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccgctttagatgatatgaagtgtttcttctagcacttttttaagcttgcg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  16864623 tatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccactttagatgatatgaagtgtttcttctagcacttttttaagcttgag 16864722  T
Q  272 gcaaattaaggttatcttcataggaaaggcacccatgaagcaactataaccctttagagttc-ttaagttatgttagcaatatcatacaatgcatcagaa 370  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16864723 gcaaattaaggttgtcttcataggaaaggcacccatgaagcaactataacgctttagagttctttaagttatgttagcaatatcatacaatgcatcagaa 16864822  T
Q  371 aaggattat 379  Q
    |||||||||    
T  16864823 aaggattat 16864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20747433 - 20747347
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||| ||||| |||||||||    
T  20747433 tatcgttatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtaagttctattttatgtaggacccccacactct 20747347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 16864902 - 16864964
Alignment:
Q  345 tagcaatatcatacaatgcatcagaaaaggattatggttaacaaatctaatcataataacaaa 407  Q
    |||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  16864902 tagcaatatcatacaatgcatccgaagaggatgatggtgaacaaatctaatcataataacaaa 16864964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 2699240 - 2699165
Alignment:
Q  12 agtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    ||||||||||| ||||||| ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  2699240 agtatttaaaattaaataccgcaatttaaacactactaatgtgtgaattctattttatgtgggacccccacactct 2699165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16835298 - 16835212
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||  |||||||||||||||||| |||||||||    
T  16835298 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 16835212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17963694 - 17963608
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||  |||||||||||||||||| |||||||||    
T  17963694 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 17963608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25313609 - 25313523
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||| ||||  ||||||||    
T  25313609 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatatgtgttctattttatgtgtgacccgcacactct 25313523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26201103 - 26201017
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||| ||||  ||||||||    
T  26201103 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatatgtgttctattttatgtgtgacccgcacactct 26201017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 19994510 - 19994434
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||| |||||||| |||||||||    
T  19994510 aagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttacgtgggacccccacactct 19994434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11613039 - 11612953
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| | ||||||||||||| |||  | |||||| |||||||||||||||||| |||||||    
T  11613039 tatcattatcaagtatttaaaattaaataccgaaatttaaacactactaatgtgtgtgttttattttatgtgggacctcaacactct 11612953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11533837 - 11533761
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||  ||  | |||||||||||||||||||||||    
T  11533837 tatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgtgttctattttatgtgggacc 11533761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11559347 - 11559271
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||  ||  | |||||||||||||||||||||||    
T  11559347 tatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgtgttctattttatgtgggacc 11559271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6406996 - 6406910
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||  ||||| |||||||||    
T  6406996 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcaggacccccacactct 6406910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11569827 - 11569742
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||   ||  | ||||||||||||||||||||||| |||||||||    
T  11569827 tatcattatcaagtatttaaaattaaataccgcaatttaaacacttccaatgtgtgtgttctattttatgtgggacc-ccacactct 11569742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 12689942 - 12690014
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    ||||||||| ||||||| || |||||||||||| |||  | ||||||||||||||||||||| |||||||||||    
T  12689942 tatttaaaattaaataccgctatttaaacactactaatgtgtgtgttctattttatgtggga-ctccacactct 12690014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5856945 - 5857021
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtgggacc 75  Q
    |||| |||| || ||||||||| ||||||| ||||||||||||||| |||| ||  ||||||| |||||||||||||    
T  5856945 tatcattatcaattatttaaaattaaataccgcaatttaaacactactaatgtgtatgttctagtttatgtgggacc 5857021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 14509942 - 14509986
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaa 50  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||    
T  14509942 ttattaagtatttaaaattaaataccacaatttaaacactattaa 14509986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17600340 - 17600423
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| || ||||||||| |||||||  |||||||||||||| |  | |||||||||||||||||||||||  ||||||||    
T  17600340 tatcattatcaattatttaaaattaaataccacaatttaaacactaatgtt-tgtgttctattttatgtgggaccctcacactct 17600423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 17914564 - 17914638
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||| ||||||| | |||| ||||||||||||  | ||||||| ||||||||| ||||||| |||||||    
T  17914564 gtatttaaaattaaataccgtaattaaaacactattaatgtgtgtgttccattttatgtaggacctcaacactct 17914638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 22694514 - 22694439
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctcca 79  Q
    |||| |||| |||| || ||||||| |||||||||||||| |  |  | |||||||||||||||||||||||||||    
T  22694514 ttatcaagtttttataattaaatacggcaatttaaacactctagatgtgtgtgttctattttatgtgggacctcca 22694439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25496520 - 25496434
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||    
T  25496520 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactct 25496434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19896910 - 19896994
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| || ||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||    
T  19896910 tatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgttctattttatgtgggacccccacgctct 19896994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18345376 - 18345462
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| ||||||||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  18345376 tatcattattaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 18345462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19891641 - 19891568
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggac 74  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  19891641 tatcattatcaagtatttaaaattaaataccacaatttaaacactaataatgtgtgttctattttatgtgggac 19891568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12797889 - 12797968
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctcc 78  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||||||    
T  12797889 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacctcc 12797968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 17968089 - 17968014
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||||  ||||||||||||||||||||||| |||||||||    
T  17968089 aagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtgggacc-ccacactct 17968014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34495242 - 34495186
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt 57  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  34495242 tatcattatcaagtatttaaaattaaatactgcaatttaaacactaataatatgtgt 34495186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 42925798 - 42925726
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||| ||||||   | |||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  42925798 gtatttaaaattaaatatcactatttaaacactactaatgtgtgttctattttacgtgggacctccacactct 42925726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24537159 - 24537073
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| | | ||||||||||| ||||  ||||||| |||||||||||||||| |||||||||    
T  24537159 tatcattatcaagtatttaaaattaaataccgtagtttaaacactactaatgtatgtgttatattttatgtgggacccccacactct 24537073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25477425 - 25477339
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||  |||| |||||||||    
T  25477425 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtaagaccaccacactct 25477339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25637900 - 25637825
Alignment:
Q  1 tatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| | |||||| ||| ||||||||||| |||| |||||||||||||||||||||||    
T  25637900 tatcattatcaagtatttaaaaattaaataccgcagtttaaacactactaatgtgtgttctattttatgtgggacc 25637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 40846713 - 40846632
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||| | |||||||||    
T  40846713 ttatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggatccccacactct 40846632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 30651884 - 30651960
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  30651884 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 30651960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9179863 - 9179778
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||  |||||||  |||||||||||||| |||| |||||  |||||||||||||||||| |||||||||    
T  9179863 tatcattatcaagtatttaaat-taaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 9179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9184554 - 9184469
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||  |||||||  |||||||||||||| |||| |||||  |||||||||||||||||| |||||||||    
T  9184554 tatcattatcaagtatttaaat-taaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 9184469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29678638 - 29678712
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtggga 73  Q
    |||| |||| || ||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||||    
T  29678638 tatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtggga 29678712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12361209 - 12361279
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 71  Q
    |||| |||| || ||||||||| |||||||  |||||||||||||| |||| ||| |||||||||||||||    
T  12361209 tatcattatcaattatttaaaattaaataccacaatttaaacactactaatgtgtcttctattttatgtgg 12361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 17974476 - 17974411
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 74  Q
    |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||    
T  17974476 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggac 17974411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 15446414 - 15446342
Alignment:
Q  6 ttattaagtatttaaaagt-aaatactgcaatttaaacactattaat--atgtgttctattttatgtgggacc 75  Q
    |||| |||||||||||| | ||||||  |||||||||||||| ||||  ||||||||||||||||||||||||    
T  15446414 ttatcaagtatttaaaaattaaataccacaatttaaacactactaatgtatgtgttctattttatgtgggacc 15446342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 31329034 - 31329108
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||||||||| |||||||  | |||||||||||| |||  |||  ||||||||||| ||||||||||||||||||    
T  31329034 gtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactct 31329108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 31335755 - 31335829
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||||||||| |||||||  | |||||||||||| |||  |||  ||||||||||| ||||||||||||||||||    
T  31335755 gtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttacgtgggacctccacactct 31335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 32080374 - 32080423
Alignment:
Q  38 taaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| ||||||||||||||  ||||||||||||||||||||||| |||||    
T  32080374 taaatactattaatatgtgtgttctattttatgtgggacctccaaactct 32080423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 1934091 - 1934059
Alignment:
Q  53 tgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||||||||||||||||| ||||||    
T  1934091 tgtgttctattttatgtgggacctccccactct 1934059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 15950703 - 15950622
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||| ||||||| |||||||||||||||||||  | ||||||||||||||||||| |||||||||||||    
T  15950703 ttatcaagtatttaaaattaaataccgcaatttaaacactattaatgtgtgtgttctattttatgtggcacctccacactct 15950622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28559252 - 28559166
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| || ||||||||| ||||||| ||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||    
T  28559252 tatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactct 28559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44925057 - 44924971
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||| ||||  ||||||||||||||||||||||| |||||    
T  44925057 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgttttctattttatgtgggacctccaaactct 44924971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2966545 - 2966631
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||| |||||||  ||||||||    
T  2966545 tatcattattaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatatgggaccctcacactct 2966631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26780064 - 26780150
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||  |||||||||    
T  26780064 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacacccacactct 26780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 18875521 - 18875445
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||| |||||||||||    
T  18875521 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgtgtgttctattgtatgtgggacc 18875445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33100548 - 33100624
Alignment:
Q  1 tatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtgttctattttatgtgggacct 76  Q
    |||| |||| |||||||||||| | ||||||||||||||||| | ||||||| ||| ||||||||||||||||||||    
T  33100548 tatcattatcaagtatttaaaaattaaatactgcaatttaaagattattaatgtgtattctattttatgtgggacct 33100624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38181418 - 38181343
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 74  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||    
T  38181418 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggac 38181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28564431 - 28564347
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacact 83  Q
    |||| |||| || ||||||||| ||||||| | ||||||||||||| |||| |||||  |||||||||||||| |||||||||||    
T  28564431 tatcattatcaaatatttaaaattaaataccgtaatttaaacactactaatgtgtgtgttctattttatgtggaacctccacact 28564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 40125020 - 40124944
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  40125020 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 40124944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 5884889 - 5884939
Alignment:
Q  33 caatttaaacactattaatatgtgttctattttatgtgggacctccacact 83  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  5884889 caatttaaacactattaatgtgtgttctatttcatgtggaacctctacact 5884939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33417490 - 33417566
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||| ||||    
T  33417490 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacc 33417566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23547740 - 23547671
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| |||||||||     |||||||||||||||| |||||||| ||||    
T  23547740 tatcattatcaagtatttaaaattaaataccgcaatttaa-----attaatatgtgttctaatttatgtgagacc 23547671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1808411 - 1808487
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| || ||||||||| ||||||| ||||||||||||||  |||  | ||||||||||||||| |||||||    
T  1808411 tatcattatcaaatatttaaaattaaataccgcaatttaaacacttctaatgtgtgtgttctattttatatgggacc 1808487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 17021247 - 17021301
Alignment:
Q  32 gcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  17021247 gcaatttaaacactactaatgtgtgtgttctattttatgtgggacc-ccacactct 17021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 17551684 - 17551738
Alignment:
Q  32 gcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  17551684 gcaatttaaacactactaatgtgtgtgttctattttatgtgggacc-ccacactct 17551738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55432187 - 55432269
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacact 83  Q
    |||| |||| || ||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||    
T  55432187 tatcattatcaaatatttaaaattaaatactgcaatttaaacactactaatgtgtgttctattttgtgtgggacccccacact 55432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7570351 - 7570265
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||||  |||||||||||||||| |||||| |||||||||    
T  7570351 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgcgggacccccacactct 7570265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 14437826 - 14437740
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||  ||||||||||||| ||||||||||||||    
T  14437826 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacctccacactct 14437740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18472966 - 18473052
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  18472966 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 18473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20520921 - 20521007
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||  ||||||| ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  20520921 tatcattatcaagtatttaaagttaaataccgcaatttaaacactactaatgtgtgtattctattttatgtgggacccccacactct 20521007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 20175368 - 20175436
Alignment:
Q  16 tttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    ||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||| ||| |||||||||    
T  20175368 tttaaaattaaatactgcaatttaaatactactaatgtgtgttctattttatgtggaacc-ccacactct 20175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55326737 - 55326821
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacact 83  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||    
T  55326737 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 55326821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27709891 - 27709974
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||| |||||||||    
T  27709891 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaacgtatgttctattttatgtgggacc-ccacactct 27709974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 7860701 - 7860754
Alignment:
Q  34 aatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  7860701 aatttaaacactattaatgtgtgtgttctattttatgtgggacctccacactct 7860754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 23660615 - 23660539
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||| |||||||||||||| |||||||||||    
T  23660615 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttttattttatgtgggagctccacactct 23660539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 23665247 - 23665171
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||| ||||| |||||||||||    
T  23665247 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatatgggagctccacactct 23665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39774961 - 39774890
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtg 70  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||||  ||||||||||||||||||    
T  39774961 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtg 39774890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 12970929 - 12970860
Alignment:
Q  16 tttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacact 83  Q
    ||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||| | |||||||    
T  12970929 tttaaaattaaataccgcaatttaaacactactaaagtgtgtgttctattttatgtgggatcaccacact 12970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2206946 - 2206881
Alignment:
Q  18 taaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    ||||| |||||||||| |||||||||||| | ||  ||||||||||||||||||| || |||||||||    
T  2206946 taaaattaaatactgctatttaaacactactgat--gtgttctattttatgtgggtcccccacactct 2206881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 12965004 - 12964934
Alignment:
Q  16 tttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    ||||||| ||||||| ||||||||||||||| |||  | |||||| |||||||||||||||| |||||||||    
T  12965004 tttaaaattaaataccgcaatttaaacactactaaagtttgtgtt-tattttatgtgggaccaccacactct 12964934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 757499 - 757414
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||  |||||||  |||||||||||||| |||| |||||  ||||||||||||| |||| |||||||||    
T  757499 tatcattatcaagtatttaaat-taaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacccccacactct 757414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 46964973 - 46965058
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||| ||||||||||| |||| |||  ||||||||||||||||| ||  ||||||||    
T  46964973 tatcattatcaagtatttaaaattaaataccgcagtttaaacacta-taatgtgtgagttctattttatgtggggccctcacactct 46965058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 3656381 - 3656317
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgggacc 75  Q
    |||||||||| |||||||  | |||||||||||| |||| |  ||||||||||||||||||||||    
T  3656381 gtatttaaaattaaataccactatttaaacactactaatgtccgtgttctattttatgtgggacc 3656317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 29351200 - 29351268
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccac 80  Q
    ||||||||| |||||||  | |||||||||||| |||| |||||  | |||||||||||||||||||||    
T  29351200 tatttaaaattaaataccactatttaaacactaataatgtgtgtgttttattttatgtgggacctccac 29351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18468172 - 18468228
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt 57  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||    
T  18468172 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgt 18468228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12181888 - 12181802
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  12181888 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 12181802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3046534 - 3046610
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||||||    
T  3046534 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacc 3046610  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27246682 - 27246606
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctc 77  Q
    |||| |||| |||||||||  | ||||||  |||||||||||||||||||| |||||||||||||||||| ||||||    
T  27246682 tatcattatcaagtatttatgaataaatagcgcaatttaaacactattaatgtgtgttctattttatgtgagacctc 27246606  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12256982 - 12257067
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| ||||   ||||||||||||||||||||||| |||||||||    
T  12256982 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgcgtgtgttctattttatgtgggacc-ccacactct 12257067  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 13313445 - 13313364
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||| |||||||  | |||||||||||| |||| |||||  ||||||||||||||||| ||||||||||    
T  13313445 ttatcaagtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacatccacactct 13313364  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 4931193 - 4931269
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  4931193 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 4931269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 6590144 - 6590079
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 71  Q
    |||| |||||||||||| |||||| | |||||||||||||| |||||| |||| ||||||||||||    
T  6590144 ttatcaagtatttaaaattaaataatacaatttaaacactactaatatatgttatattttatgtgg 6590079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16373308 - 16373373
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctatttta 66  Q
    ||||||||| | |||||||||| ||| ||||||||||||||||||| |||| |||||| |||||||    
T  16373308 tatcgttatcaggtatttaaaattaactactgcaatttaaacactactaatgtgtgttatatttta 16373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26342167 - 26342251
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacact 83  Q
    |||| |||| |||||||||||| ||||||   |||||||||||||| |||| ||||  ||||||||||||||||||| |||||||    
T  26342167 tatcattatcaagtatttaaaattaaatatcacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 26342251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42625719 - 42625628
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgca-----atttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||||||     |||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  42625719 tatcattatcaagtatttaaaattaaatactgcaccgcaatttaaacactactaatgtgtgagttctattttatgtgggacccccacactct 42625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12800350 - 12800405
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg 56  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||||    
T  12800350 tatcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtg 12800405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 10392220 - 10392139
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||| ||||||| ||||||||||||||  ||  || |||||||||||||||||||| ||  ||||||||    
T  10392220 ttatcaagtatttaaaattaaataccgcaatttaaacactgataacatgtgtgttctattttatgtggggccctcacactct 10392139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 26286281 - 26286210
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacact 83  Q
    ||||||||| |||||||  | |||||||||||| |||| |||||  |||||||||||||||||| |||||||    
T  26286281 tatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacccccacact 26286210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21672165 - 21672239
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtggga 73  Q
    |||| |||| |||||| ||||| ||||||| |||||||||||| || |||| |||||  ||||||||||||||||    
T  21672165 tatcattatcaagtatataaaattaaataccgcaatttaaacagtactaatgtgtgtgctctattttatgtggga 21672239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23247694 - 23247618
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| | ||||||||||||| |||  | ||| |||||||||| ||||||||    
T  23247694 tatcattatcaagtatttaaaattaaataccgtaatttaaacactactaatgtttgttttctattttaggtgggacc 23247618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10759497 - 10759411
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||  ||||||||||||||||||||| | |||||||    
T  10759497 tatcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtctgttctattttatgtgggacccctacactct 10759411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6154568 - 6154482
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||  |||||||||||||||||| |||||||||    
T  6154568 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 6154482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7452715 - 7452801
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  7452715 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 7452801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26668238 - 26668324
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  26668238 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 26668324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26939835 - 26939921
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  26939835 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 26939921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37646193 - 37646105
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata----tgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||||    ||||||||||||||||||||||| |||||||||    
T  37646193 tatcattatcaagtatttaaaattaaataccacaatttaaacactaataatatgtgtgtgttctattttatgtgggacccccacactct 37646105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40148803 - 40148879
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||| ||  |||||||||||||||||||||    
T  40148803 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtttgttctattttatgtgggacc 40148879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 6511726 - 6511655
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacact 83  Q
    ||||||||| ||||||||||||||||||||||| |||| |||  |||||||||||||||||||  |||||||    
T  6511726 tatttaaaattaaatactgcaatttaaacactactaatgtgtgagttctattttatgtgggactcccacact 6511655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12104014 - 12104100
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||| ||||||||||||||| |||| ||||    
T  12104014 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttccattttatgtgggacccccactctct 12104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37247935 - 37247849
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  37247935 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 37247849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37537074 - 37536987
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata----tgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||||    ||||||||||||||||||||||| |||||||||    
T  37537074 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgtgttctattttatgtgggacc-ccacactct 37536987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29167109 - 29167023
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||| |||||  ||||||||    
T  29167109 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtaggaccctcacactct 29167023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 36430491 - 36430564
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    ||||||||| |||||||   ||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  36430491 tatttaaaattaaataccataatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 36430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 36424608 - 36424684
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||| ||||| |||| ||||  |||||||||||||| |||| |||||||||    
T  36424608 aagtatttaaaattaaataccacaatttaagcactactaatgtgtgtgttctattttatgtgagacccccacactct 36424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 15149659 - 15149692
Alignment:
Q  34 aatttaaacactattaatatgtgttctattttat 67  Q
    |||||||||||||||||| |||||||||||||||    
T  15149659 aatttaaacactattaatgtgtgttctattttat 15149692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 9725856 - 9725824
Alignment:
Q  53 tgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||||||||||||| ||||||||||    
T  9725856 tgtgttctattttatgtgggacatccacactct 9725824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 20180275 - 20180216
Alignment:
Q  15 atttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtggg 72  Q
    |||||||| ||||||| | ||||||||||||| |||  | ||||||||||||||||||||    
T  20180275 atttaaaattaaataccgtaatttaaacactactaatgtgtgtgttctattttatgtggg 20180216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13064946 - 13064860
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||||| |  | ||||||||||||||||||||||| |||||||||    
T  13064946 tatcattatcaagtatttaaaattaaataccgcaatttaaacactattgatgtgtgtgttctattttatgtgggacccccacactct 13064860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 55252604 - 55252690
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  55252604 tatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggaccaccacactct 55252690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33462490 - 33462407
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||| |||||||||||||||||| |||| |||||  |||||||| |||||||||||||||||    
T  33462490 tatcattatcaagtatttaaaattaaacactgcaatttaaacactactaatgtgtgtcttattttat-tgggacctccacactct 33462407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8694673 - 8694759
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  8694673 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 8694759  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 16422006 - 16422092
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| ||||||| |||| ||||||| ||||||||||||||| ||||   ||||||||||||||||||||||| |||||||||    
T  16422006 tatcattatcaagtattgaaaattaaataccgcaatttaaacactactaatgcgtgtgttctattttatgtgggacccccacactct 16422092  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 51698889 - 51698975
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| ||| |||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  51698889 tatcattatcaagcatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 51698975  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5925931 - 5925857
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| |||||||   ||||||||||||| |||| |||||||||||||||||||||||    
T  5925931 tatcattatcaagtatttaaaattaaataccataatttaaacactactaatgtgtgttctattttatgtgggacc 5925857  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27183195 - 27183269
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 75  Q
    |||| |||| |||||||||||| |||||||   ||||||||||||| |||| |||||||||||||||||||||||    
T  27183195 tatcattatcaagtatttaaaattaaataccataatttaaacactactaatgtgtgttctattttatgtgggacc 27183269  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 2820768 - 2820838
Alignment:
Q  17 ttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||| ||||||| ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  2820768 ttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 2820838  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12823046 - 12822960
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  || ||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  12823046 tatcattataaagtatttaaaattaaataccacagtttaaacactactaatgtgtgagttctattttatgtgggacccccacactct 12822960  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 19102938 - 19103012
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||| ||||||   | ||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  19102938 gtatttaaaattaaatatcactatttaaacactattaatgtgtgtgttctattttatgtgggacctccacactct 19103012  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 19107550 - 19107624
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||| |||||||  | |||||||||||| |||| ||||  |||||||||||||||||||||||||||||    
T  19107550 gtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggacctccacactct 19107624  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31728501 - 31728416
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  31728501 tatcattatgaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc-ccacactct 31728416  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33468138 - 33468064
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtggga 73  Q
    |||| |||| |||||||||||| |||||||| |||||||||||||| |||  | |||||||||||||||||||||    
T  33468138 tatcattatcaagtatttaaaattaaatactacaatttaaacactactaatgtgtgtgttctattttatgtggga 33468064  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 32081296 - 32081215
Alignment:
Q  6 ttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||||||||||| ||||||   |||||||||||||| |||| ||||  |||||||||| ||||||||||||||||||    
T  32081296 ttatcaagtatttaaaattaaatatcacaatttaaacactactaatgtgtgagttctattttacgtgggacctccacactct 32081215  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 31274484 - 31274560
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  31274484 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 31274560  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 37258989 - 37258913
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  37258989 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 37258913  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 37263689 - 37263613
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| |||||| |||||||||    
T  37263689 aagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacccccacactct 37263613  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6943744 - 6943819
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgggac 74  Q
    |||| |||| |||||||| ||| ||||||| |||||||||||| || ||||  |||||||||||||||||||||||    
T  6943744 tatcattatcaagtatttgaaattaaatacagcaatttaaacattactaatgtatgtgttctattttatgtgggac 6943819  T

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Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29349330 - 29349263
Alignment:
Q  12 agtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctc 77  Q
    ||||||||||| ||||||| ||||||||||||||  |||| |||  ||||||||||||||||||||||    
T  29349330 agtatttaaaattaaataccgcaatttaaacactgctaatgtgtgagttctattttatgtgggacctc 29349263  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 1283465 - 1283410
Alignment:
Q  314 actataaccctttagagttcttaagttatgttagcaatatcatacaatgcatcaga 369  Q
    ||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||||    
T  1283465 actataaccctgtagaattcttaaatcatgttagcaatatcttacaatgcatcaga 1283410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13060426 - 13060512
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||  ||| |||  ||||| ||||||||| |||| |||||||||    
T  13060426 tatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgagttcttttttatgtgtgaccaccacactct 13060512  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32220700 - 32220614
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactct 85  Q
    |||| |||| || ||||||||| ||||||  | ||||||||||||| |||| |||  |||||||||||||||||||| |||||||||    
T  32220700 tatcattatcaaatatttaaaattaaatatcggaatttaaacactaataatgtgtatgttctattttatgtgggacccccacactct 32220614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 40408920 - 40408975
Alignment:
Q  14 tatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttat 67  Q
    ||||||||| ||||||| ||||||||||||||| |||||  |||||||||||||||    
T  40408920 tatttaaaattaaataccgcaatttaaacactaataatatgtgtgttctattttat 40408975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 5270548 - 5270482
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacc 75  Q
    |||||||||||| |||||||  ||||||||| |||| |||| |||||  ||||||||||||||||||    
T  5270548 aagtatttaaaattaaataccacaatttaaatactactaatgtgtgtgttctattttatgtgggacc 5270482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 8029417 - 8029385
Alignment:
Q  53 tgtgttctattttatgtgggacctccacactct 85  Q
    ||||||||||||||||||||||| |||||||||    
T  8029417 tgtgttctattttatgtgggacccccacactct 8029385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31766832 - 31766914
Alignment:
Q  1 tatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccaca 81  Q
    |||| |||| |||||||||||| | ||||||  |||||||| |||||||||| ||||  ||||||||||||||||||| |||||    
T  31766832 tatcattatcaagtatttaaaaattaaataccacaatttaa-cactattaatgtgtgtgttctattttatgtgggacccccaca 31766914  T

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Target: scaffold0352 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8069 - 8155
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||| |||||||||||| |||||||||    
T  8069 tatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctatcttatgtgggacccccacactct 8155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4932 - 5002
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 71  Q
    |||| |||| |||||||||||| ||||||| |||| |||||||| | ||||||||||| ||||||||||||    
T  4932 tatcattatcaagtatttaaaattaaataccgcaacttaaacacaactaatatgtgttatattttatgtgg 5002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5034 - 5110
Alignment:
Q  11 aagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgggacctccacactct 85  Q
    |||||||||||| |||||||  |||||||||||||| |||| |  ||||||||||||||| |||||| |||||||||    
T  5034 aagtatttaaaattaaataccacaatttaaacactactaatgtgagtgttctattttatgcgggacccccacactct 5110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6192 - 6278
Alignment:
Q  1 tatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||| |||| |||||||||||| |||||||  |||||||||||| | |||| ||||  |||||| |||||||||||||| |||||||    
T  6192 tatcattatcaagtatttaaaattaaataccacaatttaaacaccactaatgtgtgtattctatcttatgtgggacctcaacactct 6278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 26413 - 26487
Alignment:
Q  13 gtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 85  Q
    |||||||||| |||||||  | |||||||||||| |||| ||||  |||||||||||||||||||||| ||||||    
T  26413 gtatttaaaattaaatacctctatttaaacactactaatgtgtgtgttctattttatgtgggacctccgcactct 26487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 30153 - 30211
Alignment:
Q  17 ttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtggga 73  Q
    |||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||||    
T  30153 ttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtggga 30211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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