View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7713_low_5 (Length: 402)
Name: NF7713_low_5
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7713_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 2219043 - 2218914
Alignment:
| Q |
50 |
tatcctttcgtttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattaca |
149 |
Q |
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| T |
2219043 |
tatcctttcgtttcattgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattaca |
2218944 |
T |
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| Q |
150 |
tttggtttatgttacattgctaaagtattg |
179 |
Q |
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| T |
2218943 |
tttggcttatgttacattgctaaagtattg |
2218914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 226 - 387
Target Start/End: Complemental strand, 2218857 - 2218697
Alignment:
| Q |
226 |
ttgtaactggaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattgannnn |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2218857 |
ttgtaactggaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggggtaaaaagattga-ttt |
2218759 |
T |
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| Q |
326 |
nnnnnnnccaccaagattgaaatgtgggtgtattgttgttttgccgttgtctatatagtgat |
387 |
Q |
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| T |
2218758 |
tttttttccaccaagattgaaatgtgggtgtattgttgttttaccgttgtctgtatagtgat |
2218697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 2226385 - 2226299
Alignment:
| Q |
235 |
gaaaatgggttttactttttgtagagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattga |
321 |
Q |
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| T |
2226385 |
gaaaatgggttttactttttgtagagaaaatttgtatttttagatttgggtttttatctatgatgaagaattgagtaaaaagattga |
2226299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 2226560 - 2226443
Alignment:
| Q |
61 |
ttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacatttggtttatg |
160 |
Q |
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||||||||||||||||||||| ||||| ||| ||||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| ||||| |||| |
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| T |
2226560 |
ttcatcgttttcttgtttcttggctatagaaatgtctaaagatttcacctttttcactcttttgttttggatctgcatatttcatcgcatttaccctatg |
2226461 |
T |
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| Q |
161 |
ttacattgctaaagtatt |
178 |
Q |
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| T |
2226460 |
ttacatagctaaagtatt |
2226443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 36246915 - 36247043
Alignment:
| Q |
51 |
atcctttcgtttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacat |
150 |
Q |
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| T |
36246915 |
atcctttctcttcattgtttggttgtttcttagctatcgaaatgtctaaagatttcacctttttcactcttttgttttggatctacaaagttcatcacat |
36247014 |
T |
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| Q |
151 |
ttggtttatgttacattgctaaagtattg |
179 |
Q |
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| T |
36247015 |
ttaccttatgttacatagctaaagtattg |
36247043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 36247113 - 36247176
Alignment:
| Q |
258 |
gagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagattga |
321 |
Q |
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| T |
36247113 |
gagaaaaattatattttaagatttgggtttttatttaagatgaagaatgaagcaaaatgattga |
36247176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 19181015 - 19180897
Alignment:
| Q |
61 |
ttcatcgttttcttgtttcttagctatcgaattgtcttaagatctcgcctttttcattcttttgttttggatctacatagttcattacatttggtttatg |
160 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||| ||||||| |||||| || || |
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| T |
19181015 |
ttcatcgtttggttgtttcttagctatcgaaatgtctaaagatttcaactttttcactcttttgttttggatctacacagttcatcacatttaccttgtg |
19180916 |
T |
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| Q |
161 |
ttacattgctaaagtattg |
179 |
Q |
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||| || |||||||||||| |
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| T |
19180915 |
ttaaatagctaaagtattg |
19180897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 19180827 - 19180766
Alignment:
| Q |
258 |
gagaaaaattgtatttttagatttgggtttttatctaagatgaagattggagtaaaaagatt |
319 |
Q |
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| T |
19180827 |
gagaaaaattatattttaagatttaagtttttatttaagatgaagaatggagaaaaaggatt |
19180766 |
T |
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