View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7713_low_6 (Length: 375)

Name: NF7713_low_6
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7713_low_6
NF7713_low_6
[»] chr7 (5 HSPs)
chr7 (38-253)||(3928573-3928788)
chr7 (34-250)||(3929921-3930137)
chr7 (43-242)||(21317534-21317733)
chr7 (245-364)||(3928818-3928937)
chr7 (1-33)||(3929800-3929832)
[»] chr8 (8 HSPs)
chr8 (45-250)||(43479645-43479850)
chr8 (45-242)||(38799455-38799652)
chr8 (45-242)||(38821865-38822062)
chr8 (45-119)||(38807079-38807153)
chr8 (72-242)||(41943904-41944074)
chr8 (73-158)||(26592212-26592297)
chr8 (73-167)||(25865735-25865829)
chr8 (79-167)||(44343990-44344078)
[»] chr2 (5 HSPs)
chr2 (44-250)||(13576300-13576506)
chr2 (73-152)||(34562651-34562730)
chr2 (73-152)||(34571445-34571524)
chr2 (73-152)||(34578913-34578992)
chr2 (73-152)||(34584662-34584741)
[»] scaffold0197 (1 HSPs)
scaffold0197 (43-242)||(30971-31170)
[»] chr5 (8 HSPs)
chr5 (44-242)||(12531452-12531650)
chr5 (44-242)||(12546969-12547167)
chr5 (44-189)||(9866627-9866772)
chr5 (44-191)||(9894654-9894800)
chr5 (81-165)||(9870018-9870102)
chr5 (94-218)||(38735501-38735625)
chr5 (44-123)||(9903568-9903647)
chr5 (76-125)||(12538675-12538724)
[»] chr4 (2 HSPs)
chr4 (46-242)||(24860506-24860702)
chr4 (106-218)||(53290720-53290832)
[»] chr1 (1 HSPs)
chr1 (73-152)||(7594130-7594209)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 3928573 - 3928788
Alignment:
Q  38 aaatcttctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatc 137  Q
    ||||||||||||| |||||||  |||||||| | |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  3928573 aaatcttctaagctctctcgcacctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatc 3928672  T
Q  138 ttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttca 237  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  3928673 ttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttca 3928772  T
Q  238 tgaaccaatcttttga 253  Q
    ||||||||||||||||    
T  3928773 tgaaccaatcttttga 3928788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 34 - 250
Target Start/End: Original strand, 3929921 - 3930137
Alignment:
Q  34 aatcaaatcttctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcg 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  3929921 aatcaaatcttctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcg 3930020  T
Q  134 tatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgat 233  Q
    ||||||||||||||||||||||||||||||||||   |||||||| |||||||||||| ||  |||| ||||  ||||||||||||||||| ||||||||    
T  3930021 tatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgat 3930120  T
Q  234 ttcatgaaccaatcttt 250  Q
    |||| ||||||||||||    
T  3930121 ttcacgaaccaatcttt 3930137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 21317733 - 21317534
Alignment:
Q  43 ttctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaa 142  Q
    ||||||||||| || || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  21317733 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 21317634  T
Q  143 acaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    |||||||||||||||| ||||||||   |||||||| |||||||||||| ||| ||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  21317633 acaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaac 21317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 3928818 - 3928937
Alignment:
Q  245 atcttttgatactttctgatttcacgcaatgtgactgttcctggtctgaatctgtgtggcttcttcattcctcatgtcgccagtgctgattttcttgtgg 344  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3928818 atcttttgatacttcctgatttcacgcaatgcgactgttcctggtctgaatctgtgtggcttcttcattcctcctgtcgccagtgctgattttcttgtgg 3928917  T
Q  345 ccattgtatggtgatatatt 364  Q
    ||||||||||||||||||||    
T  3928918 ccattgtatggtgatatatt 3928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3929800 - 3929832
Alignment:
Q  1 cagatcaattcaacattcaagattcactttttc 33  Q
    ||||||||||||| |||||||||||||||||||    
T  3929800 cagatcaattcaaaattcaagattcactttttc 3929832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 43479645 - 43479850
Alignment:
Q  45 ctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaac 144  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||    
T  43479645 ctaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaac 43479744  T
Q  145 aaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaacca 244  Q
    |||||||||||||| |||||||||  |||||||| |||||||||||||||  ||||||| | |||||||||||||||||| |||||||||||   |||||    
T  43479745 aaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaacca 43479844  T
Q  245 atcttt 250  Q
    ||||||    
T  43479845 atcttt 43479850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 38799652 - 38799455
Alignment:
Q  45 ctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaac 144  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || ||||||||     
T  38799652 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38799553  T
Q  145 aaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    | |||||| |  || ||||||||   |||||||| ||| ||||| |||||| |||||||||  ||||| || |||||||| ||||| |||||| ||||    
T  38799552 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaac 38799455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 38821865 - 38822062
Alignment:
Q  45 ctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaac 144  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || ||||||||     
T  38821865 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 38821964  T
Q  145 aaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    | |||||| |  || ||||||||   |||||||| ||| ||||| |||||| |||||||||  ||||| || |||||||| ||||| |||||| ||||    
T  38821965 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaac 38822062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 38807153 - 38807079
Alignment:
Q  45 ctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaat 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  38807153 ctaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaat 38807079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 242
Target Start/End: Complemental strand, 41944074 - 41943904
Alignment:
Q  72 tgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatt 171  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||||| ||   |    
T  41944074 tgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgct 41943975  T
Q  172 tcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    || ||||  |||  ||||||   | ||||||||| |||||| || |||||||| ||||| |||||| ||||    
T  41943974 tcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaac 41943904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 26592297 - 26592212
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagata 158  Q
    ||||| ||||||||||||||||| || ||||| | ||||||||||||||| || || || ||||| |||||||| |||||||||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagata 26592212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 25865829 - 25865735
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagc 167  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| | ||| ||||| |||||||| || |||||||| || |||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagc 25865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 44344078 - 44343990
Alignment:
Q  79 tgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagc 167  Q
    ||||||||||| |||||||| || || |||||||||||||||||||| | ||| ||||| |||||||| || || ||||| || |||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagc 44343990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 13576506 - 13576300
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaa 143  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  13576506 tctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaa 13576407  T
Q  144 caaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaacc 243  Q
    ||||||||||||||| ||||||||   |||||||| |||||||||||| ||| | || || | |||||| ||||||||||| ||||| |||||  |||||    
T  13576406 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaacc 13576307  T
Q  244 aatcttt 250  Q
    |||||||    
T  13576306 aatcttt 13576300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 34562651 - 34562730
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 152  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34562730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 34571445 - 34571524
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 152  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34571524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 34578913 - 34578992
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 152  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34578913 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34578992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 34584662 - 34584741
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 152  Q
    |||||||||||||||||   ||||| ||| |  |||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  34584662 gcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 34584741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 31170 - 30971
Alignment:
Q  43 ttctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaa 142  Q
    ||||||||||| || || |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  31170 ttctaagccctttcaccacgaattcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaa 31071  T
Q  143 acaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    |||||||||||||||| ||||||||   |||||||| |||||||||||| ||| ||||||||| |||||  ||||||||||| |||||||||||| ||||    
T  31070 acaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaac 30971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 44 - 242
Target Start/End: Complemental strand, 12531650 - 12531452
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaa 143  Q
    ||||||||||||||||||||||||| |  || |||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||    
T  12531650 tctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12531551  T
Q  144 caaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    ||||||||||||||| ||||||||   |||||||| |||||||||||| ||| | ||||||| |||||| ||||||||||| |||||||||||| ||||    
T  12531550 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaac 12531452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 242
Target Start/End: Original strand, 12546969 - 12547167
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaa 143  Q
    ||||||| ||||||||||| ||||| |  ||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||    
T  12546969 tctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaa 12547068  T
Q  144 caaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
    ||||||||||||||| ||||||||   |||||||| |||||||||||| ||| | ||||||| |||||| ||||||||||| |||||||||||| ||||    
T  12547069 caaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaac 12547167  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 9866627 - 9866772
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaa 143  Q
    |||||||||||| |||||||||||||   || ||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  9866627 tctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaa 9866726  T
Q  144 caaaccaacaagatacgcttcagcgatttcttgaatagcagaaaca 189  Q
    |||||||||||||||  ||| |||   |||||||| ||||||||||    
T  9866727 caaaccaacaagatagtctttagcagcttcttgaagagcagaaaca 9866772  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 9894800 - 9894654
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaa 143  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||| | |||||| ||||||| ||||||||||||||| |||| ||| |||||||||||    
T  9894800 tctaagccctctcgcctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaa 9894702  T
Q  144 caaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagc 191  Q
    ||||| ||||| | | |||||| | | |||||||| ||||||||||||    
T  9894701 caaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagc 9894654  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 9870102 - 9870018
Alignment:
Q  81 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttca 165  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||| ||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttca 9870018  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 38735625 - 38735501
Alignment:
Q  94 ataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgc 193  Q
    ||||| ||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||  |||||  || || ||||| |||||||||||||     
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgt 38735526  T
Q  194 tgatctggaatcagagatcagtttt 218  Q
    || | ||||| | |||||| |||||    
T  38735525 tgctatggaacctgagatctgtttt 38735501  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 9903647 - 9903568
Alignment:
Q  44 tctaagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagca 123  Q
    ||||| |||||||||||  ||||||| | |||||||||||||||||||| ||||| ||||| || ||||||| |||||||    
T  9903647 tctaaaccctctcgcctgcgattcttttggcaagttgaatatccttaggtataatagtaacgcttttagcataaatagca 9903568  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 12538724 - 12538675
Alignment:
Q  76 agttgaatatccttaggcataatggtaactctcttagcatgaatagcaca 125  Q
    ||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  12538724 agttgaatacctttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 24860702 - 24860506
Alignment:
Q  46 taagccctctcgcctctgattcttcttgcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaaca 145  Q
    ||||||||||||||||||||||| |  || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  146 aaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatcagagatcagttttgaaatcgtgagcgatttcatgaac 242  Q
      ||||| ||||| ||||||||   |||||||| |||||||||||||||  ||||||| | |||||| ||||||||||| |||||||||||| ||||    
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaac 24860506  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 53290832 - 53290720
Alignment:
Q  106 ctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcgatttcttgaatagcagaaacagcgctgatctggaatc 205  Q
    |||||||||||||| | |||||| || |||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||| || || | ||||| |    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctatggaacc 53290733  T
Q  206 agagatcagtttt 218  Q
     |||||| |||||    
T  53290732 tgagatctgtttt 53290720  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 7594130 - 7594209
Alignment:
Q  73 gcaagttgaatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcttcaaacaaaccaac 152  Q
    ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| ||||| || || |||||||| |||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaac 7594209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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