View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7713_low_8 (Length: 335)
Name: NF7713_low_8
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7713_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 38504325 - 38504010
Alignment:
| Q |
19 |
tttagatcacgttgaaaattgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaaccaaatgaattaatcacat |
118 |
Q |
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| T |
38504325 |
tttagatcacgttgaaaattg--aaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaaccaaatgaattaatcacat |
38504228 |
T |
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| Q |
119 |
ttttgaacgtgattaaccaggtgtnnnnnnnnggggg-gactgaatatcattactcttattttattaacttatttattaatccgctcgaatgaagtttag |
217 |
Q |
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| T |
38504227 |
ttttgaacgtgattaaccaggtgtaaaaaaaaaagggtgactgaatatcattactcttattttattaacttatttattaatccgctcgaatgaagtttag |
38504128 |
T |
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| Q |
218 |
gaattttaaatgaagttgatgttgaatgtggctaagggattgattgtgtattgtaggaagcctttgctgttgtaagagaagcttccaagagagttcttgg |
317 |
Q |
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| T |
38504127 |
gaattttaaatgaagttgatgttgaatgtggctaagggatcgattgtgtattgtaggaagcctttgctgttgtaagagaagcttccaagagagttcttgg |
38504028 |
T |
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| Q |
318 |
tcttcgtccatttgatgt |
335 |
Q |
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| T |
38504027 |
tcttcgtccatttgatgt |
38504010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 51854921 - 51854852
Alignment:
| Q |
33 |
aaaattgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaacca |
102 |
Q |
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| T |
51854921 |
aaaattgtgaaattgtgtttaatcataaagttgaatcaaccacaattttaactatgaatagaattaacca |
51854852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 20727180 - 20727210
Alignment:
| Q |
18 |
atttagatcacgttgaaaattgtgaaattat |
48 |
Q |
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| T |
20727180 |
atttagatcacgttgaaaattgtgaaattat |
20727210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 19296998 - 19297063
Alignment:
| Q |
37 |
ttgtgaaattattattaatcatgaagttgaactaaccacaattttgactacgaattgaattaacca |
102 |
Q |
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| T |
19296998 |
ttgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaattaacca |
19297063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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