View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7713_low_9 (Length: 334)
Name: NF7713_low_9
Description: NF7713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7713_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 29816935 - 29817240
Alignment:
| Q |
13 |
aatataaactgtagtcaccgtagcataacttgaaaatcttcctcaagcccggcttctttaaaacagtggccactcaaacaagtttcgaatattgaagatt |
112 |
Q |
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| T |
29816935 |
aatataaactgtagtcaccgtagcataacttgaaaatcttcctcaagcccagcttctttaaaacagtggccactcaaacaagtttcgaatattgaagatt |
29817034 |
T |
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| Q |
113 |
ttgcctacatctgatactgcttatggaagttgtttgcttgtgtagcattttgctggtcaaattcatctcattttgccactggaagctcaatgttcgttgc |
212 |
Q |
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| T |
29817035 |
ttgcctacatctgatactgcttatggaagttgtttgctagtgcagcattttgctggtcaaattcatctcattttgccactggaagctcaatgttcgttgc |
29817134 |
T |
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| Q |
213 |
agaatgaatgatgctattgtcaaggactgacgactgtttgatcttgaaacacttcaacaacttgtttgcacaccaaacggcagccactactgaatattcg |
312 |
Q |
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| T |
29817135 |
agaatgaatgatgctattgtcaaggactgacgactgtttgatcttgaaacacttcaacaacttgtttgcacaccaaacggcagccactactgaatattcg |
29817234 |
T |
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| Q |
313 |
caatga |
318 |
Q |
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|||||| |
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| T |
29817235 |
caatga |
29817240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 53 - 319
Target Start/End: Original strand, 29825239 - 29825505
Alignment:
| Q |
53 |
cctcaagcccggcttctttaaaacagtggccactcaaacaagtttcgaatattgaagattttgcctacatctgatactgcttatggaagttgtttgcttg |
152 |
Q |
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|||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |
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| T |
29825239 |
cctcaagcccagcttctttaaaacaatggccactcaaataagtttcaaatattgaagattttgcctgcatctgatactgcttctgtaagttgttggcttg |
29825338 |
T |
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| Q |
153 |
tgtagcattttgctggtcaaattcatctcattttgccactggaagctcaatgttcgttgcagaatgaatgatgctattgtcaaggactgacgactgtttg |
252 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||| || | || |
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| T |
29825339 |
tgtagcattttgctggtcaagttcatctcatttcgccacaggaagctccatgttcatcgcagaatgaatgatgctattgtcaaggactgacaaccatatg |
29825438 |
T |
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| Q |
253 |
atcttgaaacacttcaacaacttgtttgcacaccaaacggcagccactactgaatattcgcaatgat |
319 |
Q |
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| T |
29825439 |
atcttgaaacactttaacatcttgtttgcacaccaaacggcagccgctattcactatttgcaatgat |
29825505 |
T |
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