View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7714_high_1 (Length: 291)
Name: NF7714_high_1
Description: NF7714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7714_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 39077337 - 39077601
Alignment:
| Q |
13 |
gagacggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctg |
112 |
Q |
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| T |
39077337 |
gagacggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctg |
39077436 |
T |
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| Q |
113 |
tcttttctacctgttgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgt |
212 |
Q |
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| T |
39077437 |
tcttttctacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgt |
39077536 |
T |
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| Q |
213 |
gtctttgaatttgtaaagatagttctattgtgtttctgtttcttgcgtatgcatattgatatttg |
277 |
Q |
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| T |
39077537 |
gtctttgaatttgtaaagatagttctattgtgtttctgtttcttgcgtatgcatattgatatttg |
39077601 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 30768370 - 30768521
Alignment:
| Q |
20 |
tcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttc |
119 |
Q |
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||||||||||| ||||||| || |||||||||||||| | |||||| | ||||| ||||||||||| | ||||| ||||| || || | |||||| |
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| T |
30768370 |
tcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttt |
30768469 |
T |
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| Q |
120 |
tacctgttgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
171 |
Q |
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| T |
30768470 |
taccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
30768521 |
T |
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