View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7715_high_4 (Length: 320)
Name: NF7715_high_4
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7715_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 37846499 - 37846802
Alignment:
| Q |
1 |
tagtggtttcgaatcatatatattttttcttaacacatgacatgatggctacaccttggcatagacgattccaccttaccagttttgttaagtagcaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37846499 |
tagtggtttcgaatcatatatattttttcttaacacatgacatgatggctacaccttggcatagacgattccaccttacctgttttgttaagtagcaata |
37846598 |
T |
|
| Q |
101 |
gnnnnnnngtgcaaacctcattgccaaatcatatattcactcgatagggtacaagaaaatctccacaagccacacagggtgtcgacacgtaaaacttaat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37846599 |
gaaaaaaagtgcaaacctcattgccaaatcatatattcactcgatagggtacaagaaaatctccacaagccacacagggtgtcgacacgtaaaacttaat |
37846698 |
T |
|
| Q |
201 |
tccagtacaggtttgtacaaatatatcctgatcgatttgaatgaggtttctgtgcaatatattccctttttaaagtgcaagtgtatggtccccaatttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37846699 |
tccagtacaggtttgtacaaatatatcctgatcgatttgaatgaggtttctgtgcaatatattccctttttaaagtgcaagtgtatggtccccaatttcc |
37846798 |
T |
|
| Q |
301 |
attt |
304 |
Q |
| |
|
|||| |
|
|
| T |
37846799 |
attt |
37846802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University