View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7715_high_9 (Length: 250)
Name: NF7715_high_9
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7715_high_9 |
 | |
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| [»] chr3 (12 HSPs) |
| |
|
| [»] scaffold0691 (1 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2838403 - 2838652
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2838403 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
2838502 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838503 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
2838602 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838603 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
2838652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5413221 - 5412972
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
5413221 |
cctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaat |
5413122 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||| |
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|
| T |
5413121 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaa |
5413022 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5413021 |
aaactagcttggcaagagtggtttttcctaggccccccattcctaccact |
5412972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2855613 - 2855862
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2855613 |
cctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaat |
2855712 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
2855713 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaa |
2855812 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
2855813 |
aaattagcttggcaagagtagtttttcctataccccccattcccaccact |
2855862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2749330 - 2749082
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||| ||||| ||| | |||||| ||| |
|
|
| T |
2749330 |
cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat |
2749231 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
2749230 |
tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa |
2749131 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2749130 |
aaactagcttggcaagagtggtttttcctaggcctcccattcctaccac |
2749082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2807602 - 2807354
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| | ||||||| |||| | ||| | | ||||||||||||||||||| || |||||||| |
|
|
| T |
2807602 |
cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat |
2807503 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||| ||||||||||| || ||||||| ||||||| |||| |
|
|
| T |
2807502 |
tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa |
2807403 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccac |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2807402 |
aaactagcttggcaagagtggtttttcctagacctcccattcctaccac |
2807354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2769404 - 2769155
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||| ||| || ||| | ||||||| ||||||| ||||||| ||||||| | | ||||| ||||||||| || |||||||| |
|
|
| T |
2769404 |
cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat |
2769305 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| |
|
|
| T |
2769304 |
tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat |
2769205 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2769204 |
aaactagtttggcaagagtggtttttcctagaccccccattcctaccact |
2769155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2759549 - 2759300
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||| || |||||||| |
|
|
| T |
2759549 |
cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat |
2759450 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||| ||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| | ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
2759449 |
tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa |
2759350 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
2759349 |
aaactagcttggcaagagtggttttgccgagaccccccattcctaccact |
2759300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 2797692 - 2797447
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||||| ||||||| ||||||| |||||||| ||||||| ||||||| | | |||||||| || |
|
|
| T |
2797692 |
ttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcct |
2797593 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaac |
204 |
Q |
| |
|
|||||||||| ||||| | || ||||| |||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||| || || ||||| |
|
|
| T |
2797592 |
ccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaac |
2797493 |
T |
|
| Q |
205 |
tagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2797492 |
tagcttggcaagagtggtttttcctagacctcccattccaaccact |
2797447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2818892 - 2818643
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
||||||||||| ||||||| ||| || ||| ||||||| || ||||||| ||||| | || |||| | || ||||||||||| | || || ||||| |
|
|
| T |
2818892 |
cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat |
2818793 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||||||||| || |||||| ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
2818792 |
tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa |
2818693 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818692 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
2818643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 2790651 - 2790493
Alignment:
| Q |
5 |
ttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgct |
104 |
Q |
| |
|
||||||| |||||||||||||||| | ||| ||||||| ||||||| ||||||| |||||||| ||||||| |||||||| | | |||||||| || |
|
|
| T |
2790651 |
ttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcct |
2790552 |
T |
|
| Q |
105 |
ccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagca |
163 |
Q |
| |
|
|||||||||| ||||| | || ||||| ||| ||||||||||||| |||| ||||||| |
|
|
| T |
2790551 |
ccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagca |
2790493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 2790491 - 2790453
Alignment:
| Q |
212 |
gcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccact |
2790453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 21945728 - 21945676
Alignment:
| Q |
197 |
tcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccac |
249 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| | || |||||||||||||| |
|
|
| T |
21945728 |
tcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccac |
21945676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 5955 - 6204
Alignment:
| Q |
1 |
cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| | ||||| ||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
5955 |
cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat |
6054 |
T |
|
| Q |
101 |
tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa |
200 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||||||| ||||||||||| || ||||||| ||||||||| | || ||||||||||||||| |||| |
|
|
| T |
6055 |
tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa |
6154 |
T |
|
| Q |
201 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccact |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
6155 |
aaactagcttggcaagagtggttttccctatacctcccattcctaccact |
6204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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