View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7715_low_1 (Length: 731)
Name: NF7715_low_1
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7715_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 179 - 714
Target Start/End: Original strand, 4144347 - 4144885
Alignment:
| Q |
179 |
gttgtccctaatagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctcttctcttctcattgtttaactatacac |
278 |
Q |
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| T |
4144347 |
gttgtccctaatagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctcttctcttctcattgtttaactatacac |
4144446 |
T |
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| Q |
279 |
cgctaaatagt---aacatatagtaaaagattaatttacaatatataaaactctgctataattaattaaaaatatatcagtttaaaatatgcatcatgca |
375 |
Q |
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| T |
4144447 |
tgctaaatagtagtaacatatagtaaaagattaatttacaatatataaaactctgctataattaattaaaaatatatcagtttaaaatatgcatcatgca |
4144546 |
T |
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| Q |
376 |
tgtgcttgcatatacttgagcaacacattcactcaaatgttttgcatagatcctattgagttattttcatcgtacaagagatttaatgattttattatgt |
475 |
Q |
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| T |
4144547 |
tgtgcttgcatatacttgagcaacacattcactcaaatgttttgcatagatcccattgagttattttcatcgtacaagagagttaatgattttattatgt |
4144646 |
T |
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| Q |
476 |
aagtttctattttagtttttgtcttacactttcgaaaaatgtggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagca |
575 |
Q |
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| T |
4144647 |
aagtttctattttagtttttgtcttacactttcgaaaaatgtggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagca |
4144746 |
T |
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| Q |
576 |
tatagaaaatccaaactatgcaagtgtatattattattctttaaaattccaatccctctgaaaaagtatgagtgattatcgttagagcattgtagtttca |
675 |
Q |
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| T |
4144747 |
tatagaaaatccaaactatgcaagtgtatattattattctttaaaattccaatccctctgaaaaagtataagtgattatcgttagagcattgtagtttca |
4144846 |
T |
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| Q |
676 |
gattctatacatagtatacttttcatattattgatgatt |
714 |
Q |
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| T |
4144847 |
gattctatacatagtatacttttcatattattgatgatt |
4144885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4144168 - 4144281
Alignment:
| Q |
1 |
tgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgtta-tttcttttttgaag |
99 |
Q |
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| T |
4144168 |
tgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgttattttcttttttgaag |
4144267 |
T |
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| Q |
100 |
gagggttaaataag |
113 |
Q |
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| T |
4144268 |
gagggttaaataag |
4144281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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