View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7715_low_10 (Length: 264)
Name: NF7715_low_10
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7715_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 31796663 - 31796905
Alignment:
| Q |
18 |
agttcactcatgtaagaatatatgccaaattttttgtaataaaccattttcaatttccaaaaccgaatagtaaagaacatagaagaatggttttnnnnnn |
117 |
Q |
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| T |
31796663 |
agttcactcatgtaagaatctatgacaaattttttgtaataaaccattttcaatgtccaaaaccgaatagtaaagaacatagaagaatggttttaaaaaa |
31796762 |
T |
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| Q |
118 |
n-gagaacatagaagaagatgacgaaggaagacgaatcaacgattcatatggagtggttattcaacaacgctctcacactcactcagagcttcatgcaga |
216 |
Q |
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| T |
31796763 |
gagagaacatagaagaagatgacgaaggaagacgaatcaacaatccatatggagtggttattcaacaacgctctcacactcactcagagcttcatgcaga |
31796862 |
T |
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| Q |
217 |
ttctctctcctctttggaactaacctccattcgtaaaatcgtca |
260 |
Q |
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| T |
31796863 |
ttctctgtcctctttggaactaacctccattc-taaaatcgtca |
31796905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 31798373 - 31798417
Alignment:
| Q |
31 |
aagaatatatgccaaattttttgtaataaaccattttcaatttcc |
75 |
Q |
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| T |
31798373 |
aagaatctatgctaaaatttatgtaataaaccattttcaatttcc |
31798417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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