View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7715_low_13 (Length: 240)
Name: NF7715_low_13
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7715_low_13 |
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| [»] scaffold1657 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9084916 - 9084696
Alignment:
| Q |
1 |
ttgtgtctaaaacctacaattgattacttaattagtttcaagatgttttaataaaatggttatgaccaatgtcatctagta--ataacatttataagttc |
98 |
Q |
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| T |
9084916 |
ttgtgtctaaaacctacaatttattacttaattagtttcaagatgttttaataaaatggttatgaccaatgtcatctagtataataacatttataagttc |
9084817 |
T |
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| Q |
99 |
gtctccacagagattgtgaaatttctacttaacaacaacgattcaattcaagaagtgtaaattcaggggactgcgcatggtatacgatgattcacaattg |
198 |
Q |
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| T |
9084816 |
gtctctg----gattgtgaaatttctacttaacaacaacgattcaattcaagaagtgtaaattcaggggactgcgcatggtatacggtgattcacaattg |
9084721 |
T |
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| Q |
199 |
atgaaataaatactcacaaaagaac |
223 |
Q |
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| T |
9084720 |
atgaaataaatactcacaaaagaac |
9084696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 9085097 - 9085025
Alignment:
| Q |
72 |
tcatctagtaataacatttataagttcgtctccacagagattgtgaaatttctacttaacaacaacgattcaa |
144 |
Q |
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| T |
9085097 |
tcatcaagtaataatatttataagttggtctccacatggattgtgaattttcaacttaacaataatgattcaa |
9085025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 40341052 - 40340983
Alignment:
| Q |
68 |
aatgtcatctagtaataacatttataagttcgtctccacagagattgtgaaatttctacttaacaacaac |
137 |
Q |
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| T |
40341052 |
aatgtcatcgagtaataatatttataagttcctatctataggaattatgaaatttctacttaacaacaac |
40340983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 17336922 - 17336886
Alignment:
| Q |
79 |
gtaataacatttataagttcgtctccacagagattgt |
115 |
Q |
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| T |
17336922 |
gtaataaaatttataagttcgtctccatagagattgt |
17336886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 30705158 - 30705096
Alignment:
| Q |
72 |
tcatctagtaataacatttataagttcgtctccacagagattgtgaaatttctacttaacaac |
134 |
Q |
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| T |
30705158 |
tcatcgagcaataatatttataagttcgtctctacaatgattgtgaaatttccacttaacaac |
30705096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1657 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1657
Description:
Target: scaffold1657; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 263 - 300
Alignment:
| Q |
78 |
agtaataacatttataagttcgtctccacagagattgt |
115 |
Q |
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| T |
263 |
agtaataaaatttataagttcgtctccacaaagattgt |
300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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