View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7715_low_2 (Length: 711)

Name: NF7715_low_2
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7715_low_2
NF7715_low_2
[»] scaffold0060 (3 HSPs)
scaffold0060 (344-544)||(36752-36950)
scaffold0060 (96-274)||(37934-38108)
scaffold0060 (27-96)||(38147-38216)
[»] chr8 (4 HSPs)
chr8 (96-259)||(20808946-20809109)
chr8 (276-391)||(20808729-20808844)
chr8 (435-544)||(3165687-3165794)
chr8 (132-249)||(6286544-6286661)
[»] scaffold0158 (1 HSPs)
scaffold0158 (276-391)||(11876-11991)
[»] chr4 (1 HSPs)
chr4 (641-697)||(45266062-45266118)
[»] chr1 (1 HSPs)
chr1 (641-697)||(47861421-47861477)
[»] chr5 (2 HSPs)
chr5 (641-697)||(38256117-38256173)
chr5 (546-583)||(38256023-38256060)
[»] chr3 (1 HSPs)
chr3 (546-582)||(52421861-52421897)


Alignment Details
Target: scaffold0060 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 344 - 544
Target Start/End: Complemental strand, 36950 - 36752
Alignment:
Q  344 aaacatcgtgtttaaactctttaaacttcacaactaaaattgcattcgagtaaccgcattcacgttctgagtagtgttttcccattcatatacttgttac 443  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| ||||||| |||||||||||    
T  36950 aaacatcgtgtttaaactctttaaacttcacaactaaagttgcatttgagtaaccacattcatgttctgagtagtgtttttccattcagatacttgttac 36851  T
Q  444 tgtacttgatatttttggaatggtacttcgagtctaatttaaaatcctttggatgcattattcctacttgtcgcgtcatacacaacccccttttgactaa 543  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||||||||    
T  36850 tgtacttgatatttttggaatggtacttcgagtctaatgtaaaatcctctgga-acattattcctacttgtcgcgtcatacacaa-ccccttttgactaa 36753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 38108 - 37934
Alignment:
Q  96 aacatggtactacctcaaacatctgattgaagtatcaactgacgagtacatcaaatataattctcatctgagtaatagtgcactgactgacgagtacgca 195  Q
    ||||||||||| ||||||||||||||| ||||||  ||| |||||  |||||||||| |||||||||||||||||||| ||||||||||||||||| |||    
T  38108 aacatggtact-cctcaaacatctgatggaagtactaaccgacga--acatcaaataaaattctcatctgagtaatagcgcactgactgacgagtatgca 38012  T
Q  196 atacataaggtagtacaactgatggctcaatatataacgtatatttatagtcatggattttctcatgaacttatccttt 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  38011 atacataaggtagtacaactgatggctcaatatataacgtgtatttatagtcatggattttctcctgaa-ttatccttt 37934  T

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Target: scaffold0060; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 38216 - 38147
Alignment:
Q  27 agtttatttcaacgaatgtaaagcctgattcaacattctccattattcaacacataaagaggaggtgtta 96  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  38216 agtttatttcaacgaatgtaaaaactgattcaactttctccattattcaacacataaagaggaggtgtta 38147  T

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Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 20809109 - 20808946
Alignment:
Q  96 aacatggtactacctcaaacatctgattgaagtatcaactgacgagtacatcaaatataattctcatctgagtaatagtgcactgactgacgagtacgca 195  Q
    |||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  20809109 aacatggtactacctcaaacatctgatgaaagtactaactgacgagtacatcaaatataattcccatctgagtaatagtgcactgactgacgagtatgca 20809010  T
Q  196 atacataaggtagtacaactgatggctcaatatataacgtatatttatagtcatggattttctc 259  Q
    | ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  20809009 acacataagatagtacaattgatggctcaatatatgacgtatatttatagtcatggattttctc 20808946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 276 - 391
Target Start/End: Complemental strand, 20808844 - 20808729
Alignment:
Q  276 tagtcccatgccataggtgactgacgaattcttaacttgtatggcaacattcttttatttacttttcgaaacatcgtgtttaaactctttaaacttcaca 375  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20808844 tagtcccatgccataggtcactgatgaattcttaacttgtatggcaacattcttttatttactttatgaaacatcgtgtttaaactctttaaacttcaca 20808745  T
Q  376 actaaaattgcattcg 391  Q
    ||||||||||||||||    
T  20808744 actaaaattgcattcg 20808729  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 435 - 544
Target Start/End: Complemental strand, 3165794 - 3165687
Alignment:
Q  435 acttgttactgtacttgatatttttggaatggtacttcgagtctaatttaaaatcctttggatgcattattcctacttgtcgcgtcatacacaaccccct 534  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||| |||||    
T  3165794 acttgttactatacttgatatttgtggaatggtacttcgagtctaatgtaaaatcctctgga-acattattcctacttgtcgcgtcatacacaa-cccct 3165697  T
Q  535 tttgactaaa 544  Q
    ||||||||||    
T  3165696 tttgactaaa 3165687  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 6286661 - 6286544
Alignment:
Q  132 aactgacgagtacatcaaatataattctcatctgagtaatagtgcactgactgacgagtacgcaatacataaggtagtacaactgatggctcaatatata 231  Q
    ||||| ||| ||||| |||||||||||  |||||||||||||||||| |||| |||||||  ||||| | ||||||||||||||||||||| |||| |||    
T  6286661 aactggcgattacattaaatataattcatatctgagtaatagtgcaccgactaacgagtatacaatagacaaggtagtacaactgatggcttaatacata 6286562  T
Q  232 acgtatatttatagtcat 249  Q
    |||||||| |||||||||    
T  6286561 acgtatatctatagtcat 6286544  T

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Target: scaffold0158 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 276 - 391
Target Start/End: Complemental strand, 11991 - 11876
Alignment:
Q  276 tagtcccatgccataggtgactgacgaattcttaacttgtatggcaacattcttttatttacttttcgaaacatcgtgtttaaactctttaaacttcaca 375  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  11991 tagtcccatgccataggtcactgatgaattcttaacttatatggcaacattcttttatttactttctgaaacattgtgtttaaactctttaaacttcaca 11892  T
Q  376 actaaaattgcattcg 391  Q
    ||||||||| ||||||    
T  11891 actaaaattccattcg 11876  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 641 - 697
Target Start/End: Original strand, 45266062 - 45266118
Alignment:
Q  641 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttga 697  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  45266062 ggtgatagagaaagctcagcgactccttcttctacaagagttggtggaacctcttga 45266118  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 641 - 697
Target Start/End: Complemental strand, 47861477 - 47861421
Alignment:
Q  641 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttga 697  Q
    |||||||||||||| | || ||||||||||| |||||||||||||||||||||||||    
T  47861477 ggtgatagagaaagcttagcgactccttcttctacaagagttggtggaacctcttga 47861421  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 697
Target Start/End: Original strand, 38256117 - 38256173
Alignment:
Q  641 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttga 697  Q
    ||||||| |||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  38256117 ggtgataaagaaagctcaacgactccttattttacaagagttggtggaacctcttga 38256173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 38256023 - 38256060
Alignment:
Q  546 tgaactggttttcaaaatagttaactgttttgattaat 583  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38256023 tgaactggttttcaaaatagttaacttttttgattaat 38256060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 52421861 - 52421897
Alignment:
Q  546 tgaactggttttcaaaatagttaactgttttgattaa 582  Q
    |||||||||||||||||||||||||||||||||||||    
T  52421861 tgaactggttttcaaaatagttaactgttttgattaa 52421897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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