View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7715_low_3 (Length: 709)

Name: NF7715_low_3
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7715_low_3
NF7715_low_3
[»] chr2 (31 HSPs)
chr2 (18-676)||(41010363-41011021)
chr2 (161-354)||(25562966-25563159)
chr2 (77-379)||(303995-304291)
chr2 (139-311)||(17148790-17148961)
chr2 (129-360)||(12000521-12000750)
chr2 (139-281)||(33909306-33909448)
chr2 (279-382)||(29257478-29257581)
chr2 (279-382)||(41114770-41114873)
chr2 (170-359)||(15651247-15651433)
chr2 (279-360)||(18299065-18299146)
chr2 (279-389)||(6799779-6799889)
chr2 (279-382)||(13203879-13203982)
chr2 (134-229)||(41114886-41114981)
chr2 (133-229)||(13203770-13203866)
chr2 (297-389)||(17148926-17149018)
chr2 (134-229)||(6799902-6799997)
chr2 (166-265)||(17249354-17249453)
chr2 (305-387)||(2475944-2476026)
chr2 (300-389)||(17249463-17249552)
chr2 (133-229)||(18299159-18299255)
chr2 (307-382)||(22572622-22572697)
chr2 (139-229)||(22572717-22572807)
chr2 (300-360)||(45444376-45444436)
chr2 (197-270)||(16221016-16221089)
chr2 (77-183)||(2475769-2475875)
chr2 (306-379)||(33909250-33909323)
chr2 (217-270)||(45444441-45444494)
chr2 (165-229)||(29257401-29257465)
chr2 (139-228)||(15429187-15429276)
chr2 (310-379)||(16220932-16221001)
chr2 (259-311)||(6799836-6799888)
[»] chr8 (22 HSPs)
chr8 (77-379)||(34282764-34283066)
chr8 (161-386)||(13243124-13243349)
chr8 (279-382)||(36406390-36406493)
chr8 (279-382)||(28928171-28928274)
chr8 (162-321)||(39431591-39431746)
chr8 (279-360)||(3383942-3384023)
chr8 (293-382)||(35384266-35384355)
chr8 (133-229)||(24965035-24965131)
chr8 (291-379)||(27321766-27321854)
chr8 (64-211)||(27321885-27322032)
chr8 (139-229)||(28928067-28928158)
chr8 (304-382)||(24965148-24965226)
chr8 (141-211)||(38214769-38214839)
chr8 (305-379)||(38214863-38214937)
chr8 (162-229)||(36406506-36406573)
chr8 (175-263)||(31500808-31500902)
chr8 (307-372)||(31500724-31500789)
chr8 (247-282)||(12478244-12478279)
chr8 (247-290)||(43843320-43843363)
chr8 (265-311)||(28928178-28928224)
chr8 (139-231)||(21138073-21138165)
chr8 (263-311)||(27321813-27321861)
[»] chr3 (38 HSPs)
chr3 (129-395)||(33178980-33179241)
chr3 (163-389)||(41218249-41218454)
chr3 (279-382)||(7501073-7501176)
chr3 (279-382)||(28311394-28311497)
chr3 (129-302)||(53068246-53068415)
chr3 (279-395)||(53652015-53652131)
chr3 (279-389)||(43700087-43700197)
chr3 (279-382)||(14461182-14461285)
chr3 (279-382)||(44047701-44047803)
chr3 (307-382)||(26370943-26371018)
chr3 (279-382)||(12909945-12910046)
chr3 (307-382)||(37516766-37516841)
chr3 (190-284)||(41358576-41358670)
chr3 (139-222)||(9600364-9600447)
chr3 (64-211)||(53987802-53987950)
chr3 (139-228)||(53651912-53652001)
chr3 (162-229)||(26371038-26371105)
chr3 (139-229)||(28311291-28311381)
chr3 (139-229)||(44047598-44047688)
chr3 (307-382)||(25391746-25391821)
chr3 (162-229)||(37516679-37516746)
chr3 (305-360)||(53987974-53988029)
chr3 (129-262)||(47511628-47511761)
chr3 (133-200)||(44625706-44625773)
chr3 (163-229)||(7500994-7501060)
chr3 (307-379)||(26278475-26278547)
chr3 (305-365)||(41358537-41358597)
chr3 (139-229)||(14461079-14461169)
chr3 (139-229)||(25391841-25391931)
chr3 (157-227)||(38239485-38239555)
chr3 (139-192)||(12909834-12909887)
chr3 (168-211)||(35077267-35077310)
chr3 (305-351)||(9600460-9600506)
chr3 (165-211)||(26278403-26278449)
chr3 (190-231)||(497414-497455)
chr3 (251-284)||(41199872-41199905)
chr3 (259-311)||(7501074-7501126)
chr3 (305-341)||(41199857-41199893)
[»] chr7 (42 HSPs)
chr7 (162-392)||(28693894-28694124)
chr7 (133-389)||(21932636-21932891)
chr7 (139-389)||(21688123-21688370)
chr7 (165-312)||(4843338-4843485)
chr7 (162-312)||(19377426-19377577)
chr7 (279-388)||(23704364-23704473)
chr7 (162-270)||(38128969-38129077)
chr7 (162-270)||(3012341-3012449)
chr7 (139-311)||(814924-815092)
chr7 (279-382)||(35300329-35300432)
chr7 (139-302)||(42439522-42439681)
chr7 (289-379)||(7873124-7873214)
chr7 (309-387)||(26722855-26722933)
chr7 (289-379)||(5991324-5991414)
chr7 (289-379)||(22206590-22206680)
chr7 (289-379)||(22228059-22228149)
chr7 (280-382)||(38991078-38991180)
chr7 (300-379)||(3012454-3012533)
chr7 (314-380)||(41759530-41759596)
chr7 (166-252)||(41759602-41759688)
chr7 (300-382)||(814874-814956)
chr7 (64-211)||(30852277-30852423)
chr7 (151-225)||(38991181-38991255)
chr7 (305-397)||(30852447-30852539)
chr7 (166-229)||(23704486-23704549)
chr7 (162-229)||(26722955-26723022)
chr7 (305-379)||(25688115-25688189)
chr7 (310-379)||(42439466-42439535)
chr7 (304-360)||(38128904-38128960)
chr7 (162-229)||(35300445-35300512)
chr7 (175-222)||(22206698-22206745)
chr7 (175-222)||(22227994-22228041)
chr7 (253-311)||(38991128-38991186)
chr7 (300-382)||(41862247-41862329)
chr7 (139-211)||(5991443-5991524)
chr7 (162-211)||(7873243-7873292)
chr7 (206-270)||(41862334-41862398)
chr7 (260-311)||(22206637-22206688)
chr7 (260-311)||(22228051-22228102)
chr7 (133-171)||(7873295-7873333)
chr7 (76-116)||(19377328-19377368)
chr7 (64-116)||(41759750-41759802)
[»] chr5 (47 HSPs)
chr5 (139-360)||(15503924-15504141)
chr5 (65-388)||(36234450-36234752)
chr5 (162-270)||(16667458-16667566)
chr5 (165-311)||(767316-767462)
chr5 (279-382)||(35469014-35469117)
chr5 (279-379)||(14832715-14832815)
chr5 (279-389)||(15675424-15675534)
chr5 (162-302)||(12267343-12267482)
chr5 (164-340)||(17192570-17192740)
chr5 (197-379)||(6900800-6900978)
chr5 (133-229)||(30248967-30249063)
chr5 (279-360)||(2476476-2476557)
chr5 (279-382)||(30249076-30249179)
chr5 (279-360)||(34444077-34444158)
chr5 (193-379)||(13942657-13942821)
chr5 (307-382)||(33007025-33007100)
chr5 (307-382)||(34846485-34846560)
chr5 (289-379)||(1672391-1672481)
chr5 (289-389)||(16567912-16568012)
chr5 (162-270)||(21069040-21069148)
chr5 (289-360)||(32953591-32953662)
chr5 (157-229)||(35468929-35469001)
chr5 (300-379)||(21069153-21069232)
chr5 (289-379)||(7161988-7162078)
chr5 (162-229)||(33006938-33007005)
chr5 (305-379)||(37552051-37552125)
chr5 (305-379)||(37654881-37654955)
chr5 (289-379)||(43228547-43228637)
chr5 (305-378)||(12267288-12267361)
chr5 (162-229)||(15675344-15675411)
chr5 (139-210)||(42989542-42989613)
chr5 (139-229)||(34443974-34444064)
chr5 (197-270)||(8214628-8214701)
chr5 (165-229)||(34846401-34846465)
chr5 (305-360)||(37779780-37779835)
chr5 (64-171)||(37779597-37779704)
chr5 (259-311)||(30249077-30249129)
chr5 (344-395)||(192894-192945)
chr5 (260-311)||(7162035-7162086)
chr5 (305-360)||(37607573-37607628)
chr5 (260-302)||(16567904-16567946)
chr5 (162-211)||(43228666-43228715)
chr5 (265-311)||(1672438-1672484)
chr5 (260-302)||(32953628-32953670)
chr5 (343-389)||(42989673-42989719)
chr5 (166-211)||(7162107-7162152)
chr5 (259-311)||(14832762-14832814)
[»] chr4 (55 HSPs)
chr4 (162-392)||(2521789-2522015)
chr4 (128-372)||(50099838-50100075)
chr4 (64-311)||(49744973-49745221)
chr4 (139-281)||(41972402-41972544)
chr4 (139-311)||(52373747-52373919)
chr4 (258-379)||(43003088-43003209)
chr4 (279-382)||(46645715-46645818)
chr4 (279-382)||(4552297-4552400)
chr4 (279-378)||(10715768-10715867)
chr4 (279-378)||(10929538-10929637)
chr4 (279-389)||(4728670-4728780)
chr4 (279-389)||(32005995-32006105)
chr4 (162-270)||(25237608-25237716)
chr4 (132-229)||(31364137-31364234)
chr4 (279-392)||(40969336-40969449)
chr4 (279-382)||(2017338-2017441)
chr4 (162-269)||(36947550-36947657)
chr4 (144-262)||(8901817-8901934)
chr4 (305-382)||(52373892-52373969)
chr4 (307-382)||(10058656-10058731)
chr4 (77-220)||(50383835-50383978)
chr4 (279-380)||(2576284-2576385)
chr4 (289-389)||(9003677-9003777)
chr4 (307-379)||(31364254-31364326)
chr4 (133-229)||(10715658-10715755)
chr4 (133-229)||(10929428-10929525)
chr4 (305-382)||(41972343-41972420)
chr4 (129-229)||(40969223-40969323)
chr4 (279-360)||(1585781-1585862)
chr4 (162-229)||(4728590-4728657)
chr4 (139-229)||(4552194-4552284)
chr4 (305-379)||(14044462-14044536)
chr4 (300-354)||(25237721-25237775)
chr4 (280-348)||(50383987-50384055)
chr4 (170-229)||(10058577-10058636)
chr4 (162-229)||(46645635-46645702)
chr4 (139-229)||(2017454-2017544)
chr4 (307-360)||(11826971-11827024)
chr4 (163-231)||(31929046-31929114)
chr4 (265-311)||(4728677-4728723)
chr4 (260-302)||(9003669-9003711)
chr4 (305-359)||(9694204-9694258)
chr4 (162-211)||(14044389-14044438)
chr4 (317-374)||(49745206-49745263)
chr4 (163-211)||(2576204-2576252)
chr4 (163-211)||(9694132-9694180)
chr4 (305-360)||(32828281-32828336)
chr4 (170-211)||(9003607-9003648)
chr4 (250-283)||(15034457-15034490)
chr4 (325-386)||(36947650-36947711)
chr4 (139-183)||(1585718-1585762)
chr4 (259-311)||(10715769-10715821)
chr4 (259-311)||(10929539-10929591)
chr4 (139-171)||(11827101-11827133)
chr4 (139-183)||(32005923-32005967)
[»] chr6 (33 HSPs)
chr6 (161-382)||(2836068-2836285)
chr6 (279-382)||(23663660-23663763)
chr6 (279-379)||(9696167-9696267)
chr6 (279-382)||(2941334-2941437)
chr6 (281-382)||(10397710-10397811)
chr6 (279-380)||(34248916-34249017)
chr6 (279-389)||(15122155-15122265)
chr6 (139-280)||(339344-339493)
chr6 (237-380)||(31188215-31188354)
chr6 (279-379)||(9046819-9046919)
chr6 (284-392)||(14938813-14938921)
chr6 (133-229)||(34249030-34249126)
chr6 (279-389)||(15529058-15529168)
chr6 (204-302)||(34188856-34188954)
chr6 (307-382)||(1780944-1781019)
chr6 (281-360)||(28614327-28614406)
chr6 (139-222)||(14938934-14939017)
chr6 (285-359)||(2960790-2960864)
chr6 (133-229)||(1781039-1781135)
chr6 (133-229)||(10397809-10397905)
chr6 (133-229)||(23663776-23663872)
chr6 (237-380)||(31200059-31200199)
chr6 (305-389)||(339476-339560)
chr6 (280-360)||(34188911-34188991)
chr6 (162-229)||(2941254-2941321)
chr6 (162-229)||(9696087-9696154)
chr6 (162-229)||(15122075-15122142)
chr6 (64-229)||(9046932-9047109)
chr6 (162-229)||(15528978-15529045)
chr6 (141-204)||(2960695-2960758)
chr6 (260-311)||(28614355-28614406)
chr6 (253-311)||(10397760-10397818)
chr6 (259-311)||(9696168-9696220)
[»] chr1 (46 HSPs)
chr1 (139-360)||(4641960-4642177)
chr1 (134-281)||(24646056-24646203)
chr1 (169-281)||(24745450-24745562)
chr1 (279-395)||(37153878-37153994)
chr1 (279-382)||(25007575-25007678)
chr1 (279-379)||(14727441-14727541)
chr1 (139-262)||(9527053-9527176)
chr1 (281-360)||(27460792-27460871)
chr1 (279-382)||(44305523-44305626)
chr1 (279-382)||(1428320-1428423)
chr1 (139-230)||(27584029-27584120)
chr1 (279-382)||(27583918-27584017)
chr1 (300-382)||(33468872-33468954)
chr1 (279-379)||(25011441-25011541)
chr1 (133-229)||(25011553-25011649)
chr1 (307-382)||(31844542-31844617)
chr1 (289-379)||(4774093-4774183)
chr1 (139-270)||(6802072-6802207)
chr1 (133-229)||(27460698-27460794)
chr1 (300-392)||(34459253-34459345)
chr1 (163-270)||(34459141-34459248)
chr1 (307-379)||(9527196-9527268)
chr1 (300-379)||(6801988-6802067)
chr1 (139-229)||(37154007-37154097)
chr1 (139-229)||(44305420-44305510)
chr1 (64-229)||(44238875-44239041)
chr1 (306-379)||(49898526-49898599)
chr1 (77-209)||(4773953-4774085)
chr1 (307-382)||(6331804-6331879)
chr1 (162-229)||(14727361-14727428)
chr1 (162-229)||(31844637-31844704)
chr1 (307-360)||(8239411-8239464)
chr1 (139-228)||(25007472-25007561)
chr1 (272-361)||(48940327-48940416)
chr1 (197-270)||(49898442-49898515)
chr1 (165-229)||(6331720-6331784)
chr1 (163-302)||(48940365-48940499)
chr1 (305-382)||(24646185-24646262)
chr1 (305-382)||(24745544-24745619)
chr1 (289-388)||(44238740-44238835)
chr1 (162-229)||(8239322-8239391)
chr1 (247-291)||(26686400-26686444)
chr1 (260-311)||(4774085-4774136)
chr1 (247-290)||(33169257-33169300)
chr1 (253-311)||(27460785-27460843)
chr1 (259-311)||(27583964-27584016)
[»] scaffold0618 (2 HSPs)
scaffold0618 (279-382)||(1807-1910)
scaffold0618 (165-229)||(1730-1794)
[»] scaffold0075 (4 HSPs)
scaffold0075 (279-382)||(11635-11738)
scaffold0075 (279-389)||(7022-7131)
scaffold0075 (61-229)||(6840-7009)
scaffold0075 (157-229)||(11550-11622)
[»] scaffold0021 (5 HSPs)
scaffold0021 (162-281)||(109264-109383)
scaffold0021 (192-270)||(112193-112271)
scaffold0021 (306-388)||(109198-109281)
scaffold0021 (76-116)||(109441-109481)
scaffold0021 (309-360)||(112128-112179)
[»] scaffold0638 (2 HSPs)
scaffold0638 (307-379)||(4217-4289)
scaffold0638 (162-211)||(4142-4191)
[»] scaffold0108 (2 HSPs)
scaffold0108 (247-284)||(20943-20980)
scaffold0108 (305-341)||(20928-20964)


Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 41010363 - 41011021
Alignment:
Q  18 gtttttcatctttgttgtgcgtaaaatgattcaatcatcaagatctggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacn 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||     
T  41010363 gttttccatctttgttgtgcgtaaaatgattcaatcatcaagatctggggcggagccaaccccagctagcctgggcactagtctagactcagctccaact 41010462  T
Q  118 nnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaag 217  Q
          ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  41010463 ttttttgtactaagttcagctattactagaacttttagttttttctgcggatttttgtataaattctgcaggaaacacatttcctgcagattttactaag 41010562  T
Q  218 gatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtga 317  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  41010563 gatttaggttcccatgtgaggtaataccacaagattttaggatccgcaggaaatgtgaaattatccgtaggaaatgtgaaattttctgcaggaaatgtga 41010662  T
Q  318 aattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccgtcattgatcaagattcctttcacgcaaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  41010663 aattattcgcaggaaggaagtaacgttttgcgataaattttttgtccacactctataaaattcctagctccgtcactgatcaagattcctttcacgcaaa 41010762  T
Q  418 tggatacaatgtaactaacttgaatactctaagggacaaaaaataatggaattttaagttatacaaaaaataatggaattttaagctgcgttgaattcac 517  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41010763 tggatacaatgtaactaacttgaatactc-aagggaccaaaaataatggaattttaagttatacaaaaaataatggaattttaagctgtgttgaattcac 41010861  T
Q  518 tcaaatggtaaccctaaatattttagtgtaccaatgttataggatttacttttagttttattcctagcagtcttctcacttgagttgaag-nnnnnnngt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  41010862 tcaaatggtaaccctaaatattttagtgtaccaatgttataggatttacttttagttttattcctagcagtcttctcacttgagttgaagaaaaaaaagt 41010961  T
Q  617 caacaacaaatgatgacgtcatcattcacgtcattcacagcatgagacccataatgttaa 676  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41010962 caacaacaaatgatgacgtcatcatccacgtcattcacagcatgagacccataatgttaa 41011021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 161 - 354
Target Start/End: Original strand, 25562966 - 25563159
Alignment:
Q  161 tctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggat 260  Q
    |||||||||| || ||||||||| || ||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25562966 tctgcggattgttttgtaaattccgcaggaaatacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggat 25563065  T
Q  261 ccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaa 354  Q
    || ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  25563066 ccacaggaaatgtgaaattatccccaggaaatgtgaaattatctgcaggaaatatgaaattatttgcagaaaggaagtaacgttttgcgataaa 25563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 77 - 379
Target Start/End: Complemental strand, 304291 - 303995
Alignment:
Q  77 ccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtg 176  Q
    |||||||||||||||||||| | |||  ||||||||||||       |||  |||  || | ||||||||||||||||| |||| ||||||| ||  |||    
T  304291 ccccagctagcttgggcactagcccaagctcagctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcggagtt--gtg 304194  T
Q  177 taaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaa 276  Q
    ||||||  || ||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||   ||     
T  304193 taaatttcgcaggaaacacatttcttgcagattttgccaaggatttaggttcccatgtgaggtaacaccataagattttaggatccgcaggaaa---gat 304097  T
Q  277 attatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaa 376  Q
    | |||||| || |||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| ||||||  ||| ||||||||||    
T  304096 a-tatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagataagaagtaacgttttgcgataatttttttgcccaaactctataaa 303998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 139 - 311
Target Start/End: Original strand, 17148790 - 17148961
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||| ||||||||| |||  |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  17148790 attactataacttttaggtttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgc-aaggatttaggttcccaggtgagg 17148888  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
     ||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||  |||||||    
T  17148889 gaataccataggattttaggatccgcaggaaatgtggaattatctgcaggaaatgtgaaattattcgcaggaa 17148961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 129 - 360
Target Start/End: Original strand, 12000521 - 12000750
Alignment:
Q  129 aagtccaactattactagaacttttagttttttctgcggat-ttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggtt 227  Q
    ||||||| | |||| ||||| |||||| |||| |||||||| |||||||||||||| || |||||||||||||||||||||||| | |||||| |||||     
T  12000521 aagtccagccattagtagaagttttagcttttcctgcggatgttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatataggtc 12000620  T
Q  228 cccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcagg-aaatgtgaaattattcg 326  Q
    || | ||||||||||||| ||||||||||||||||||||||||   || | |||||| || ||||||||||||||| || || |||||| ||||||||||    
T  12000621 cctaggtgaggtaataccttaggattttaggatccgcaggaaa---gata-tatccgcaggaaatgtgaaattatccgccggaaaatgtaaaattattcg 12000716  T
Q  327 caggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||| ||||| ||||||||||| ||||||    
T  12000717 caggaaggacgtaacattttgcgataattttttt 12000750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 33909448 - 33909306
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    |||||||||| ||||||||||| ||||| ||||||||| ||||||||| ||| | |||||||||||||||||| | || ||||||||||| || ||||||    
T  33909448 attactagaatttttagtttttcctgcgaatttttgtgaaaattctgcaggagaaacatttcctgcagatttttccaaagatttaggttctcaggtgagg 33909349  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattat 281  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  33909348 taataccataggattttaggatccacaggaaatgtgaaattat 33909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 29257478 - 29257581
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  29257478 tatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaat 29257577  T
Q  379 tcct 382  Q
    ||||    
T  29257578 tcct 29257581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 41114873 - 41114770
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||  |||||||||||    
T  41114873 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcatgaaggaagtaacgttttgcgataaattttttgcccaagctctataaaat 41114774  T
Q  379 tcct 382  Q
    ||||    
T  41114773 tcct 41114770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 170 - 359
Target Start/End: Original strand, 15651247 - 15651433
Alignment:
Q  170 ttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaa 269  Q
    |||||||||||||| || |||||||||||||||||  ||||| | |||||||||||| || | |||||||||| || ||||||||||||||| | |||||    
T  15651247 ttttgtgtaaattccgcaggaaacacatttcctgcgtattttgccaaggatttaggtccctaggtgaggtaatgccttaggattttaggatcagtaggaa 15651346  T
Q  270 atgtgaaattatccgtagaaaatgtgaaattatctgcagg-aaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttt 359  Q
    |   || | |||||  || ||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  15651347 a---gata-tatccccaggaaatgtgaaattatccgcaggaaaatgtaaaattattcgcaggaaggacgtaacattttgcgataaattttt 15651433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 18299146 - 18299065
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18299146 tatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaatttttt 18299065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 6799889 - 6799779
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||   |||  |||  |||||||||||    
T  6799889 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaactaacgttttgtgataaaaaatttgcccaggctctataaaat 6799790  T
Q  379 tcctaactccg 389  Q
    ||||| |||||    
T  6799789 tcctagctccg 6799779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 13203879 - 13203982
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||   ||  |||||||||||    
T  13203879 tatccgtaggaaatgtgaaattatctgcggaaaatgtgaaattattcgctggaaggaagtaacattttgcgataaattttttgctcatgctctataaaat 13203978  T
Q  379 tcct 382  Q
    ||||    
T  13203979 tcct 13203982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 41114981 - 41114886
Alignment:
Q  134 caactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||| |||||||||| ||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  41114981 caaccattactagaatttttagtttttcctgcggattttcgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 41114886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 13203770 - 13203866
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||| ||||||||||||||| | |||||||||||||||    
T  13203770 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacgtttcctgcagattttgccaaggatttaggttcc 13203866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 17148926 - 17149018
Alignment:
Q  297 aattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||  ||| |||||||| ||| |||||    
T  17148926 aattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgagataaattttttgcccaagctcaataaaatttctagctccg 17149018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 6799997 - 6799902
Alignment:
Q  134 caactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||| |||||||||| |||||  |||| |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  6799997 caaccattactagaatttttaacttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 6799902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 17249354 - 17249453
Alignment:
Q  166 ggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgca 265  Q
    ||||||||||||||||||  | ||||||||||||| || ||||||| | |||||||||||||| || ||||||||||||| |||||||||||||||||||    
T  17249354 ggatttttgtgtaaattccacaggaaacacatttcttgtagattttgccaaggatttaggttctcaggtgaggtaataccttaggattttaggatccgca 17249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 2475944 - 2476026
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||  ||||||||||||||| ||||    
T  2475944 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaattcctgactc 2476026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 17249463 - 17249552
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||  ||| |||||||||||||||| ||||||    
T  17249463 tatccgcaggaaatgtgaaattattcgcaggaagaaagtaacgttttgctataaatattttgcccagactctataaaattcctgactccg 17249552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 18299255 - 18299159
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||  ||||  ||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  18299255 ccaaccattactagaatttttaacttttcttgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 18299159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 22572697 - 22572622
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  || ||||||||||||    
T  22572697 aggaaatgtgaaattattcgcaggaagaaagtaacgttttgcgataaattttttgtccaggctttataaaattcct 22572622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 22572807 - 22572717
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||  ||||| |||| ||||| ||||||||||||||||  | |||||||||||||||||||||||| | |||||||||||||||    
T  22572807 attactagaatatttagcttttcctgcgaatttttgtgtaaattccccaggaaacacatttcctgcagattttgccaaggatttaggttcc 22572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 45444436 - 45444376
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  45444436 tatctacaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcaataaatttttt 45444376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 16221089 - 16221016
Alignment:
Q  197 tttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    |||||||| |||||| ||||||||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  16221089 tttcctgcggattttgctaaggatttaagttcccaggtgagataataccttaggattttaggatctgcaggaaa 16221016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 2475769 - 2475875
Alignment:
Q  77 ccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtg 176  Q
    |||||||||| ||||||||| |||||||||||||||||||       |||  ||| ||| | ||||||||||||||||| || |  ||||||||||||||    
T  2475769 ccccagctagtttgggcactagtccagactcagctccaactttctttgtaggaagcccagccattactagaacttttagcttgtcttgcggatttttgtg 2475868  T
Q  177 taaattc 183  Q
    |||||||    
T  2475869 taaattc 2475875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 33909323 - 33909250
Alignment:
Q  306 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||| ||| |||||| ||||| |||||||||||| |||||  ||| |||||||||||||    
T  33909323 caggaaatgtgaaattatttgcatgaaggatgtaacattttgcgataaagtttttgcccagactctataaaatt 33909250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 45444494 - 45444441
Alignment:
Q  217 ggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||| ||||    
T  45444494 ggatttaggttcacaggtgaggtaataccataggattttaggatctgcaagaaa 45444441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 29257401 - 29257465
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||  || |||||||||||||||||||||||| | ||| ||||| |||||    
T  29257401 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 29257465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 15429187 - 15429276
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    ||||||||||| | | | ||||||| |||||||| |||||||||| || |||||||  |||||||  ||||||   ||||||||||||||    
T  15429187 attactagaacctctcgctttttcttcggattttggtgtaaattccgcaggaaacatgtttcctgtggattttgtcaaggatttaggttc 15429276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 16221001 - 16220932
Alignment:
Q  310 aaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||| ||||||  |||| |||||| |||||||||||||||| ||||||  |||  ||||||||||||    
T  16221001 aaatgtgcaattatatgcagaaaggaaataacgttttgcgataatttttttgcccaggctctataaaatt 16220932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 6799888 - 6799836
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  6799888 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 6799836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 77 - 379
Target Start/End: Complemental strand, 34283066 - 34282764
Alignment:
Q  77 ccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtg 176  Q
    ||||||||||| |||||||| | |||| ||||||||||||       |||  |||||||   ||||||||||||||||| ||||  |||||||||| |||    
T  34283066 ccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagtccagtcattactagaacttttagcttttcttgcggattttagtg 34282967  T
Q  177 taaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaa 276  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  34282966 taaattctgcaggaaacacatttcctgcagattttgccaaggatttaagttccgaggtgaggtaataccataggattttaggatccgcaggaaatgtgaa 34282867  T
Q  277 attatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaa 376  Q
    |||||||| |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  |||||||||    
T  34282866 attatccgcatgaaatgtgaaattatttgcaggaaatgtgaaattattcgcaggaaggaagtaacgttgtgcgataaattttttgtccaggctctataaa 34282767  T
Q  377 att 379  Q
    |||    
T  34282766 att 34282764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 161 - 386
Target Start/End: Original strand, 13243124 - 13243349
Alignment:
Q  161 tctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggat 260  Q
    |||||||| |||||||||||||| || |||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13243124 tctgcggagttttgtgtaaattccgcaggaaacacatttcctgtagattttgccaaggatttaggttcccaggtgaggtaataccttaggattttaggat 13243223  T
Q  261 ccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||| |||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||| ||| |||  |||||||||||| |||||||||||||    
T  13243224 ccgcaagaaatgtgaaattatccgcaggaaatgtgaaattatctccacaaaatgtgaaattattggcaagaaaaaagtaacgttttacgataaatttttt 13243323  T
Q  361 atccacactctataaaattcctaact 386  Q
       ||  |||||||||||||||||||    
T  13243324 gctcaggctctataaaattcctaact 13243349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 36406493 - 36406390
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  36406493 tatccgtaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 36406394  T
Q  379 tcct 382  Q
    ||||    
T  36406393 tcct 36406390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 28928171 - 28928274
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| ||||| ||||||    
T  28928171 tatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaactttttacgataaattttttacccagactctttaaaat 28928270  T
Q  379 tcct 382  Q
    ||||    
T  28928271 tcct 28928274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 39431746 - 39431591
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||||| |||||||||||||| |  ||||||||||||| |||||||||| | || |||||||||||| | ||||||||||||||||||||||| ||| |    
T  39431746 ctgcggagttttgtgtaaattccgtaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaataccataggattttcggacc 39431647  T
Q  262 cgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaatt 321  Q
    |||| ||||   || | |||||| |  |||||||||||||||| ||||||||||||||||    
T  39431646 cgcaagaaa---gata-tatccgcatgaaatgtgaaattatctacaggaaatgtgaaatt 39431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 3384023 - 3383942
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  3384023 tatccgtaggaaatgtgaatttatctgcaggaaacgtgaaattattcgtaggaaggaagtaacgttttgcgataaaattttt 3383942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 35384355 - 35384266
Alignment:
Q  293 gtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||  |||  |||||||||||||||    
T  35384355 gtgaaattatctggaggaaatgtgaaattattcgtaggaaggaagtaccgttttgcgataaattttttgcccaagctctataaaattcct 35384266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 24965035 - 24965131
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||| |  ||||||||||||||    
T  24965035 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcctaggatttaggttcc 24965131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 27321854 - 27321766
Alignment:
Q  291 atgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  27321854 atgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 27321766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 27322032 - 27321885
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    ||||| |||||| ||||||||||| |||||||| | |||| |||||||||||        |||  ||| ||| | ||||||| |||||||||||||| ||    
T  27322032 ggggcggagccacccccagctagcctgggcacttgcccaggctcagctccaattttctttgtagcaagcccagccattactaaaacttttagtttttcct 27321933  T
Q  164 gcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||||||| ||||||||| || |||||||||||||||||| |||||    
T  27321932 gcggatttttatgtaaattccgcaggaaacacatttcctgcaaatttt 27321885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 28928067 - 28928158
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacattt-cctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| ||||||| |||||||||||||| || |||||||||||| |||||||||||| | |||||||||||||||    
T  28928067 attactagaatttttagcttttcctgcggagttttgtgtaaattccgcaggaaacacatttccctgcagattttgccaaggatttaggttcc 28928158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 24965148 - 24965226
Alignment:
Q  304 tgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||  |||  |||||||||||||||    
T  24965148 tgcaggaaatgtgaaattattcgcagaaagaaagtaaggttttgcgataaattttttgcccaggctctataaaattcct 24965226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 38214769 - 38214839
Alignment:
Q  141 tactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  38214769 tactagaacttttagcttttcctgcggatttttatgtaaattctgcataaaacacatttcctgcagatttt 38214839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 38214863 - 38214937
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  38214863 gcaggaaatgtgaaattattcgcaggaatgaagtaacattttgcgataatttttttgcccaagctctataaaatt 38214937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 36406573 - 36406506
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||| ||||||||||||| |  |||||||||||||||||||||||| | ||||||| |||||||    
T  36406573 ctgcggatatttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggattgaggttcc 36406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 31500902 - 31500808
Alignment:
Q  175 tgtaaattctgctggaaacacatttcctgcagattttactaagga------tttaggttcccatgtgaggtaataccataggattttaggatccg 263  Q
    |||||||||||| ||||||||||||||| | |||||| | |||||      ||||| |||| | ||||||||||||| |||||||||||||||||    
T  31500902 tgtaaattctgcaggaaacacatttcctacggattttgccaaggatttatgtttagattccaaggtgaggtaataccttaggattttaggatccg 31500808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 31500789 - 31500724
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactcta 372  Q
    ||||||||| |||||||||| | |||||||||||  |||||| ||||||||||||| || ||||||    
T  31500789 aggaaatgtaaaattattcgtatgaaggaagtaatattttgcaataaattttttattcagactcta 31500724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 12478244 - 12478279
Alignment:
Q  247 taggattttaggatccgcaggaaatgtgaaattatc 282  Q
    |||||||||||||||||||||||||||| |||||||    
T  12478244 taggattttaggatccgcaggaaatgtgcaattatc 12478279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 43843320 - 43843363
Alignment:
Q  247 taggattttaggatccgcaggaaatgtgaaattatccgtagaaa 290  Q
    |||||||||||||||||||||||||||| |||||| || |||||    
T  43843320 taggattttaggatccgcaggaaatgtgcaattattcgcagaaa 43843363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 28928178 - 28928224
Alignment:
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||    
T  28928178 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaa 28928224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 21138165 - 21138073
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttccca 231  Q
    ||||||||||| | | | |||| ||||||||||  |||||||||  ||  ||||||| ||||||||  ||||| | |||||||||||||||||    
T  21138165 attactagaacctcttgcttttcctgcggatttgggtgtaaatttcgcatgaaacacgtttcctgcgaattttgccaaggatttaggttccca 21138073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 27321861 - 27321813
Alignment:
Q  263 gcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||| ||||||||||||| | |||||||||||||||||  |||||||    
T  27321861 gcaggatatgtgaaattatctgcagaaaatgtgaaattattcgcaggaa 27321813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 2e-85; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 129 - 395
Target Start/End: Complemental strand, 33179241 - 33178980
Alignment:
Q  129 aagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    ||||||| | ||||||||||||||||| |||| ||||| |||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||    
T  33179241 aagtccagccattactagaacttttagcttttcctgcgaatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttc 33179142  T
Q  229 ccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgca 328  Q
    ||| |||||||||||||||||||||||||||| |||||||||   || | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  33179141 ccaggtgaggtaataccataggattttaggat-cgcaggaaa---gata-tatccgcagaaaatgtgaaattatctgcagaaaatgtgaaattattcgca 33179047  T
Q  329 ggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccgtcattg 395  Q
    |||| |||||||||||||||||||||||||||  ||| |||||||||||||||| |||||| |||||    
T  33179046 ggaatgaagtaacgttttgcgataaattttttgcccagactctataaaattcctgactccgccattg 33178980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 163 - 389
Target Start/End: Complemental strand, 41218454 - 41218249
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatcc 262  Q
    |||| |||||||| ||||||| || ||||||||||||||||| |||||| | ||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  41218454 tgcgcatttttgtctaaattccgcaggaaacacatttcctgccgattttgccaagaatttaggttctcatgtgaggtaataccttaggattttaggatcc 41218355  T
Q  263 gcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttat 362  Q
    |||||||                     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  41218354 gcaggaa---------------------atgtaaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgc 41218276  T
Q  363 ccacactctataaaattcctaactccg 389  Q
    | | |||||||||||||||| ||||||    
T  41218275 ctagactctataaaattcctgactccg 41218249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 7501073 - 7501176
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |  |||||||||||    
T  7501073 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaagtaagtaacgttttgcgataaattttttatcgaggctctataaaat 7501172  T
Q  379 tcct 382  Q
    ||||    
T  7501173 tcct 7501176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 28311394 - 28311497
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  ||| ||||||||||||    
T  28311394 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaatgttttgcgataaattttttgcccagactctataaaat 28311493  T
Q  379 tcct 382  Q
    ||||    
T  28311494 tcct 28311497  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 53068246 - 53068415
Alignment:
Q  129 aagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    ||||||| | |||||||||| |||||  |||| ||||||||||||||||||||||  | |||||||||||||||||||||||| | ||| ||||||||||    
T  53068246 aagtccagccattactagaagttttaacttttcctgcggatttttgtgtaaattccacaggaaacacatttcctgcagattttgccaagaatttaggttc 53068345  T
Q  229 ccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    | | ||||| ||||||| |||||||||||||| ||||| |||    ||  |||||| |||||||||||||||||    
T  53068346 ctaggtgagataataccttaggattttaggattcgcagtaaa----aatatatccgcagaaaatgtgaaattat 53068415  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 279 - 395
Target Start/End: Original strand, 53652015 - 53652131
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||| |||| ||||||||||||    
T  53652015 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaagaacgtaatgttttgcgataaattttttgtccagactctataaaat 53652114  T
Q  379 tcctaactccgtcattg 395  Q
    ||||  ||||| |||||    
T  53652115 tcctggctccgccattg 53652131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 43700197 - 43700087
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||  |||||||||||    
T  43700197 tatccgttggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagaaaagaagtaacgttttgcgatatattttttacccaagctctataaaat 43700098  T
Q  379 tcctaactccg 389  Q
    | || ||||||    
T  43700097 ttctgactccg 43700087  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 14461182 - 14461285
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||  |||  |||||||||||    
T  14461182 tatccgtaggaaatgtgaatttatctgcaggaaatgtaaaattattcgtaggaaggaagtaacgttttgtgataaattttttgcccaggctctataaaat 14461281  T
Q  379 tcct 382  Q
    ||||    
T  14461282 tcct 14461285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 44047701 - 44047803
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||| |||||| |||||    
T  44047701 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaagaagtaacgttttgcgataaattttttgtccagactcta-aaaat 44047799  T
Q  379 tcct 382  Q
    ||||    
T  44047800 tcct 44047803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 26371018 - 26370943
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  26371018 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcct 26370943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 12909945 - 12910046
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||| |||||||||||||||||||||  |||||||||||||| |||||||||||||||||  |||  |||||||||||    
T  12909945 tatccgtaggaaatgtgaatttatctacaggaaatgtgaaattattcg--ggaaggaagtaacgatttgcgataaattttttgcccaggctctataaaat 12910042  T
Q  379 tcct 382  Q
    ||||    
T  12910043 tcct 12910046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 37516766 - 37516841
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||    
T  37516766 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcct 37516841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 41358670 - 41358576
Alignment:
Q  190 aaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccg 284  Q
    ||||||||||||||| |||||| | || ||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  41358670 aaacacatttcctgcggattttgccaatgatttaggttctcaggtgaggtaataccttaggatttttggatccgcaggaaatgtgcaattatccg 41358576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 9600364 - 9600447
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggattt 222  Q
    ||||||||||||||| | |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| || |||||||    
T  9600364 attactagaacttttggcttttcctgcggatttttatgtaaattctgcaggaaacacatttcctgcagattttgcttaggattt 9600447  T

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Target: chr3; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 53987802 - 53987950
Alignment:
Q  64 ggggcagagccaaccc-cagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttc 162  Q
    ||||| |||||| ||| ||||||||||||||||| |||||| ||||||| |||        ||| | ||  |||| ||||||||||||||||| |||| |    
T  53987802 ggggcggagccacccctcagctagcttgggcactagtccaggctcagcttcaattttctttgtagtcagctcaaccattactagaacttttagcttttcc 53987901  T
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  53987902 tgcggatttttatgtaaattccgcaggaaacacatttcctgcagatttt 53987950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 53651912 - 53652001
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||  ||||||||||||||||| | ||||||||||||||    
T  53651912 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgcatttcctgcagattttgccaaggatttaggttc 53652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26371105 - 26371038
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  26371105 ctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 26371038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 28311291 - 28311381
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| || |||||   |||||||| ||||||| | |||||||||||||||    
T  28311291 attactagaatttttagtttttcctgcggatttttgtgtaaattccgcaggaaatgtatttcctgtagattttgccaaggatttaggttcc 28311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 44047598 - 44047688
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  44047598 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 44047688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 25391821 - 25391746
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||||||||  |||  |||||||||||||||    
T  25391821 aggaaatgtgaaattattcgtaagaaggaagtaatgttttgcgataaattttttgcccaagctctataaaattcct 25391746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37516679 - 37516746
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  37516679 ctgcggaattttgtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatctaggttcc 37516746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 53987974 - 53988029
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  53987974 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataaatttttt 53988029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 47511761 - 47511628
Alignment:
Q  129 aagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    ||||||| | ||||||||||| ||| | |||| |||||||||||||| |||||| ||  ||||||||||||||||| |||||| |||| |||||| |||     
T  47511761 aagtccagccattactagaacctttcgcttttcctgcggatttttgtataaattttgaaggaaacacatttcctgcggattttgctaaagatttaagttt 47511662  T
Q  229 ccatgtgaggtaataccataggattttaggatcc 262  Q
    ||   |||  ||||||| || |||||||||||||    
T  47511661 cctgatgaaataataccttaagattttaggatcc 47511628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 44625706 - 44625773
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttc 200  Q
    |||||||||||||||| |||||| |||| |||| |||||||||||||||||||  |||||||||||||    
T  44625706 ccaactattactagaatttttagcttttcctgcagatttttgtgtaaattctggaggaaacacatttc 44625773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 7500994 - 7501060
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||| ||||||||||||| || ||||||||||||||| |||||||| | |||||||||||||||    
T  7500994 tgcggatgtttgtgtaaattccgcaggaaacacatttcctacagattttgccaaggatttaggttcc 7501060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 26278475 - 26278547
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||||| |||||||||| | ||||||||||| ||||||  | | |||||||||||||    
T  26278475 aggaaatgtgaaattattcgcaagaaggaagtatcattttgcgataatttttttgcctaaactctataaaatt 26278547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 41358597 - 41358537
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatcca 365  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||| |||||| ||||    
T  41358597 gcaggaaatgtgcaattatccgcaggaaggaaataacgttttgcgataatttttttgtcca 41358537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 14461079 - 14461169
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||  |||| |||||||||||| ||||||||| || |||||   || ||||||||||||| | |||||||||||||||    
T  14461079 attactagaatttttaacttttcctgcggatttttatgtaaattccgcaggaaatgtatgtcctgcagattttgccaaggatttaggttcc 14461169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 25391931 - 25391841
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| ||  ||||   ||||| |||| ||||| | |||||||||||||||    
T  25391931 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaagaaatgtatttcttgcaaattttgccaaggatttaggttcc 25391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 38239485 - 38239555
Alignment:
Q  157 tttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggtt 227  Q
    ||||| || ||||||| ||||||||||||| |||||||||||| |||| |||||| | |||||||||||||    
T  38239485 tttttttgtggattttagtgtaaattctgcaggaaacacattttctgcggattttgccaaggatttaggtt 38239555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 12909834 - 12909887
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaa 192  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||    
T  12909834 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaa 12909887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 35077267 - 35077310
Alignment:
Q  168 atttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||| ||||||||| || ||||||||||||||||||||||||    
T  35077267 atttttatgtaaattccgcaggaaacacatttcctgcagatttt 35077310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 9600460 - 9600506
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgat 351  Q
    ||||||||| |||||||||||| |||||||||||||| |||| ||||    
T  9600460 gcaggaaatatgaaattattcgtaggaaggaagtaacattttacgat 9600506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 26278403 - 26278449
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    ||||||||| ||||||||| |  ||||||||||||||||||||||||    
T  26278403 cggatttttatgtaaattccggaggaaacacatttcctgcagatttt 26278449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 497414 - 497455
Alignment:
Q  190 aaacacatttcctgcagattttactaaggatttaggttccca 231  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  497414 aaacacatttcctacggattttgctaaggatttaggttccca 497455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 41199905 - 41199872
Alignment:
Q  251 attttaggatccgcaggaaatgtgaaattatccg 284  Q
    |||||||||||||||||||||||| |||||||||    
T  41199905 attttaggatccgcaggaaatgtgcaattatccg 41199872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 7501074 - 7501126
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  7501074 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 7501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 41199893 - 41199857
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaac 341  Q
    |||||||||||| |||||| |||||||||||||||||    
T  41199893 gcaggaaatgtgcaattatccgcaggaaggaagtaac 41199857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 162 - 392
Target Start/End: Complemental strand, 28694124 - 28693894
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  28694124 ctgcggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgcccaggatttaggttcccaggtgaggtaataccataggattttaggatc 28694025  T
Q  262 cgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttta 361  Q
    ||||||||||||||||||||||| || |  |||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||     
T  28694024 cgcaggaaatgtgaaattatccgcaggatttgtgaaattatccggaggaaatgtgaaattattcgcagaaaggaagtaaagttttgcgataatttttttg 28693925  T
Q  362 tccacactctataaaattcctaactccgtca 392  Q
     |||  |||||||||||||||  ||||||||    
T  28693924 cccaggctctataaaattcctggctccgtca 28693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 133 - 389
Target Start/End: Complemental strand, 21932891 - 21932636
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccat 232  Q
    ||||| ||||||| ||||||||  |||| ||||| || ||||||||||||| || ||||||||||||||||||||||||   ||||||||||||| |||     
T  21932891 ccaaccattactaaaacttttaacttttcctgcg-atatttgtgtaaattccgcaggaaacacatttcctgcagattttgtcaaggatttaggtttccag 21932793  T
Q  233 gtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 332  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| || |||| | |||||||||||||||||| ||||||||||||||||||    
T  21932792 gtgaggtaataccataggatttttggatccgcatgaattgtgaaattatccgcaggaaatataaaattatctgcaggaaatatgaaattattcgcaggaa 21932693  T
Q  333 ggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
     |||||||| ||||||||||||||||||  ||| |||||||||||||||| ||||||    
T  21932692 agaagtaacattttgcgataaattttttgcccagactctataaaattcctgactccg 21932636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 139 - 389
Target Start/End: Original strand, 21688123 - 21688370
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||  || |||||     
T  21688123 attactagaacttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcgaaggatttaggttatcaggtgaga 21688222  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgta-gaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaag 337  Q
    ||||||| |||||||||| |||||||||||||   || | ||||||||  |||||||||||||||||||||||||||||||||||||| ||| |  | ||    
T  21688223 taataccttaggattttaagatccgcaggaaa---gata-tatccgtattaaaatgtgaaattatctgcaggaaatgtgaaattattcacagaatagcag 21688318  T
Q  338 taacgttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
    |||| ||||| ||||||||||||  | | | |||||||||||||| ||||||    
T  21688319 taacattttgtgataaattttttgcctagattctataaaattcctgactccg 21688370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 165 - 312
Target Start/End: Original strand, 4843338 - 4843485
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgc 264  Q
    ||||| |||||||| |||| ||  |||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  4843338 cggatatttgtgtacattccgcatgaaacacatttcatgcagattttgccaaggatttaggttcccaggtgaggtaatacattgggattttaggatccgc 4843437  T
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaa 312  Q
    |||||||||||||||||||| || ||||||||||||||  ||||||||    
T  4843438 aggaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaaa 4843485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 19377426 - 19377577
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    |||||||| |||||| |||||| |  ||||| |||||||||||||||||| | |||||||||||| || | ||||||||||||| |||||||||||||||    
T  19377426 ctgcggatgtttgtggaaattccgaaggaaatacatttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatc 19377525  T
Q  262 cgcaggaaatgtgaaattatccgta-gaaaatgtgaaattatctgcaggaaa 312  Q
    ||||||||||||||||||||||| | ||||||||||||||||  ||||||||    
T  19377526 cgcaggaaatgtgaaattatccgcaggaaaatgtgaaattattcgcaggaaa 19377577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 23704473 - 23704364
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  23704473 tatccgtaggaaatgtgaaattatctgcaggaaatgtaaaattattcgcaagaaagaagtaacgttttacgataaattttttatccaaactctataaaat 23704374  T
Q  379 tcctaactcc 388  Q
    |||| |||||    
T  23704373 tcctgactcc 23704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 38129077 - 38128969
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||| | ||||||||||||||||| |||||| |||| |||||||||||||||||    
T  38129077 ctgcggatttttgtgtaaattctgaaggaaacacatttcctgcatattttgccaaggatttaggttcccaggtgaggcaatatcataggattttaggatc 38128978  T
Q  262 cgcaggaaa 270  Q
    |||||||||    
T  38128977 cgcaggaaa 38128969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 3012341 - 3012449
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    |||| |||||||||||| |||| || ||||||||| |||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||    
T  3012341 ctgccgatttttgtgtacattccgcaggaaacacacttcctgcagattttgccaaggatataggttcccaggtgaggtaataccataggattttaggatc 3012440  T
Q  262 cgcaggaaa 270  Q
    |||||||||    
T  3012441 cgcaggaaa 3012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 815092 - 814924
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| || | ||| ||||||| |||||||||| | ||| ||||||||||||| ||||||    
T  815092 attactagaacttttagcttttcctacggatttttgtgtaaattccgcagaaaatacatttcttgcagattttgccaagaatttaggttcccaagtgagg 814993  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||||| ||| ||||||||||| ||| ||||   || | |||||| |||||||||||||||||  |||||||    
T  814992 taataccttagaattttaggatctgcacgaaa---gata-tatccgcagaaaatgtgaaattattagcaggaa 814924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 35300432 - 35300329
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||  |||  |||||||||||    
T  35300432 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaagaaggaagtaacgttttacgataaatttttttcccaagctctataaaat 35300333  T
Q  379 tcct 382  Q
    ||||    
T  35300332 tcct 35300329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 42439681 - 42439522
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    |||||||||||||||||||||  |||| || |||||||||||||  || |||||||||||| ||||||||||| | ||||||||||||||| | | ||||    
T  42439681 attactagaacttttagttttacctgcagagttttgtgtaaatttcgcaggaaacacattttctgcagattttgccaaggatttaggttcctaggagagg 42439582  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    ||||||||||| ||||||| || || | ||||   || | ||||||||||||||||||||||||    
T  42439581 taataccatagaattttagaatgcgtatgaaa---gata-tatccgtagaaaatgtgaaattat 42439522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 7873214 - 7873124
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||  ||| |||||||||||||    
T  7873214 aaatgtgaaattatccgcaggaaatgtgaaattattagcgggaaggaagtaacattttgcgataatttttttgcccagactctataaaatt 7873124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 26722933 - 26722855
Alignment:
Q  309 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||| ||||    
T  26722933 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaagctctataaaattcctgactc 26722855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 5991414 - 5991324
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  5991414 aaatgtgaaattatccgcaagaaatgtaaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 5991324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 22206680 - 22206590
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||  |||  ||||||||||||    
T  22206680 aaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatt 22206590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 22228059 - 22228149
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||  |||  ||||||||||||    
T  22228059 aaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatt 22228149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 280 - 382
Target Start/End: Complemental strand, 38991180 - 38991078
Alignment:
Q  280 atccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||| |||||||||||||||||  | ||||||| ||||||||||||||||||| |  |||||||||||||||| |||||| |||  |||||||||||||    
T  38991180 atccgcagaaaatgtgaaattattcgtaggaaatatgaaattattcgcaggaagaagataacgttttgcgataacttttttgtccggactctataaaatt 38991081  T
Q  380 cct 382  Q
    |||    
T  38991080 cct 38991078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 3012454 - 3012533
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||  ||| |||||||||||||    
T  3012454 tatccgcaggaaatgtgaaattattcacaggaaggaagtaacgttttgcaataatttttttgcccagactctataaaatt 3012533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 41759596 - 41759530
Alignment:
Q  314 gtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattc 380  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||    
T  41759596 gtgaaattattcgcaggaaggaagtaacgttgtgcgataaattttttgcccagactctataaaattc 41759530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 41759688 - 41759602
Alignment:
Q  166 ggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggat 252  Q
    ||||||| |||||||||| || |||||||||||||||||||||||| | ||||||||||||||| |  |||||||| ||||||||||    
T  41759688 ggattttggtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttccgagttgaggtaacaccataggat 41759602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 814956 - 814874
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||  ||| |||||||| |||||||    
T  814956 tatccgcagaaaatgtgaaattattagcaggaatgaagtaacgttttgcgataatttttttgcccagactctatataattcct 814874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 30852277 - 30852423
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    |||||||||||| ||||||||||| |||||||| | |||| |||||||||||        ||| ||||  || | ||||||||||||||||  |||| ||    
T  30852277 ggggcagagcca-ccccagctagcctgggcactagcccaggctcagctccaattttctttgtagtaagctcagccattactagaacttttaacttttcct 30852375  T
Q  164 gcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    ||||| |||| ||||||||| || ||||||||||||||| ||||||||    
T  30852376 gcggaattttatgtaaattccgcaggaaacacatttccttcagatttt 30852423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 38991255 - 38991181
Alignment:
Q  151 tttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttagg 225  Q
    ||||| |||| |||||||||||||| ||||||| | ||||||||||||||||||||||||| | |||||||||||    
T  38991255 tttagcttttcctgcggatttttgtataaattccgttggaaacacatttcctgcagattttgccaaggatttagg 38991181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 30852447 - 30852539
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccgtcattgat 397  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||  ||| | |||| |||||| ||  |||||||| ||||    
T  30852447 gcaggaaatgtgaaattattcgcaggaaggaagcaacattttgcgataatttttttccccagattctaaaaaatttctggctccgtcactgat 30852539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 23704549 - 23704486
Alignment:
Q  166 ggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||||| || | |||||||||||||||||||||| | |||||||||||||||    
T  23704549 ggatttttgtgtaaattccgccgaaaacacatttcctgcagattttgccaaggatttaggttcc 23704486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26723022 - 26722955
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||||||   |||||||||||||||    
T  26723022 ctgcggatttttatgtaaattccgcaggaaacacatttcctgcagattttgtcaaggatttaggttcc 26722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 25688189 - 25688115
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| |||||| ||||||| |||  ||||||||||||    
T  25688189 gcaggaaatgtgaaattattcacagaaaggaagtaacattttacgataatttttttacccaggctctataaaatt 25688115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 42439535 - 42439466
Alignment:
Q  310 aaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||| || || |||||||||||||||||||||||||||  ||| || ||||||||||    
T  42439535 aaatgtgaaattattcgtagaaaagaagtaacgttttgcgataaattttttgcccagaccctataaaatt 42439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 38128960 - 38128904
Alignment:
Q  304 tgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||    
T  38128960 tgcaggaaatgtgaaattatctgcaggaaggaaataacgttttgcgataaaattttt 38128904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 35300512 - 35300445
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  35300512 ctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 35300445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 22206745 - 22206698
Alignment:
Q  175 tgtaaattctgctggaaacacatttcctgcagattttactaaggattt 222  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||||    
T  22206745 tgtaaattccgcaggaaacacatttcctgcagattttacttaggattt 22206698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 22227994 - 22228041
Alignment:
Q  175 tgtaaattctgctggaaacacatttcctgcagattttactaaggattt 222  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||||    
T  22227994 tgtaaattccgcaggaaacacatttcctgcagattttacttaggattt 22228041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 38991186 - 38991128
Alignment:
Q  253 tttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||| |||||||||||||| ||||| |||| |||||||||  |||||||    
T  38991186 tttaggatccgcagaaaatgtgaaattattcgtaggaaatatgaaattattcgcaggaa 38991128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 41862329 - 41862247
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||| |||||||||||  |||||| ||||| || ||||||  ||||||||||||||||||||  || | ||||||||||||||    
T  41862329 tatccgcaggaaatgtataattatccgcagaaatgaagtattgttttgcgataaattttttactcagattctataaaattcct 41862247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5991524 - 5991443
Alignment:
Q  139 attactagaacttttagttttttctgcggattt---------ttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||||||||||||||||||| ||||||||||         || ||||||||| || ||||||||||||||||||||||||    
T  5991524 attactagaacttttagtttttcctgcggatttacctgcggtttatgtaaattccgcaggaaacacatttcctgcagatttt 5991443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 7873292 - 7873243
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||| ||||| ||||||||| || ||||||||||||||||||||||||    
T  7873292 ctgcgggtttttatgtaaattccgcaggaaacacatttcctgcagatttt 7873243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 41862398 - 41862334
Alignment:
Q  206 gattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    |||||| | |||||||||||||| ||  ||||||| |||| |||||||||||||||| |||||||    
T  41862398 gattttgccaaggatttaggttctcagatgaggtattaccttaggattttaggatccacaggaaa 41862334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 22206688 - 22206637
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||| |||||||| || ||||||||||||||  |||||||    
T  22206688 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaa 22206637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 22228051 - 22228102
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||| |||||||| || ||||||||||||||  |||||||    
T  22228051 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaa 22228102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 7873333 - 7873295
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggattt 171  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  7873333 ccaaccattactagaacttttagctttttctgcggattt 7873295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 19377328 - 19377368
Alignment:
Q  76 accccagctagcttgggcactggtccagactcagctccaac 116  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  19377328 accccagctagcttgggcactagcccaggctcagctccaac 19377368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 41759802 - 41759750
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaac 116  Q
    ||||| |||||| ||||||||||| |||||||| | |||| ||||||||||||    
T  41759802 ggggcggagccacccccagctagcctgggcactagcccaggctcagctccaac 41759750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 47)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 139 - 360
Target Start/End: Original strand, 15503924 - 15504141
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||  |||||    
T  15503924 attactagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatttaggttcccagatgagg 15504023  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagt 338  Q
    |||||||||||||||||||||||||| |||||   || | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15504024 taataccataggattttaggatccgcgggaaa---gata-tatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagt 15504119  T
Q  339 aacgttttgcgataaatttttt 360  Q
    ||| ||||||||||||||||||    
T  15504120 aacattttgcgataaatttttt 15504141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 65 - 388
Target Start/End: Complemental strand, 36234752 - 36234450
Alignment:
Q  65 gggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctg 164  Q
    |||| |||||| |||||| |||| ||| |||| | ||||||||||||||||        |||  ||| ||| | |||| |||||||||||  ||||  ||    
T  36234752 gggcggagccacccccagttagcctggacactagcccagactcagctccaattttctttgtagcaagcccagccattattagaacttttaacttttcatg 36234653  T
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgc 264  Q
    ||||||||| ||||||||| || |||||| ||||||||||||||||||| |||| |||| ||||| | ||||||| ||||||||  ||||||||||||||    
T  36234652 cggatttttatgtaaattcagcaggaaacgcatttcctgcagattttaccaagggtttaagttcctaggtgaggtgataccataacattttaggatccgc 36234553  T
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatcc 364  Q
    |||||                     ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||    
T  36234552 aggaa---------------------atgtgaaattatctgcaagaaatgtgaaattattcgcaagaaggaagtaacattttgcgataaattttttgtcc 36234474  T
Q  365 acactctataaaattcctaactcc 388  Q
    | |||||||||||||||| |||||    
T  36234473 aaactctataaaattcctcactcc 36234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 16667566 - 16667458
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16667566 ctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcccatgtgaggtaataccataggattttaggatc 16667467  T
Q  262 cgcaggaaa 270  Q
    |||| ||||    
T  16667466 cgcaagaaa 16667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 767316 - 767462
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgc 264  Q
    ||||||||||| ||||||| || ||||||||||||||| ||| |||| | |||||||||| |||||| ||||||||||||| ||||||||||||||| ||    
T  767316 cggatttttgtataaattccgcaggaaacacatttcctacaggttttgccaaggatttagattcccaggtgaggtaataccttaggattttaggatctgc 767415  T
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||||||| |||||||| ||||||||  |||||||    
T  767416 aggaaatgtgaaattatccgcagaaaatgagaaattattcgcaggaa 767462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 35469014 - 35469117
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||  |||||||||||    
T  35469014 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccaggctctataaaat 35469113  T
Q  379 tcct 382  Q
    ||||    
T  35469114 tcct 35469117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 14832815 - 14832715
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||||||||||||    
T  14832815 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagactctataaaat 14832716  T
Q  379 t 379  Q
    |    
T  14832715 t 14832715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 15675424 - 15675534
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  15675424 tatccgaaggaaatgtgaaattatctacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 15675523  T
Q  379 tcctaactccg 389  Q
    ||||| |||||    
T  15675524 tcctagctccg 15675534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 12267482 - 12267343
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    |||||||||||| ||||||||| ||  ||||||||||||||| ||||||| | | | |||||| |||  | |||||||||||||||||||||||||||||    
T  12267482 ctgcggatttttatgtaaattccgcaagaaacacatttcctgtagattttgccacgaatttagattcgtaggtgaggtaataccataggattttaggatc 12267383  T
Q  262 cgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  12267382 cgcaggaaatgtg-aattatccgcagaaaatgtgaaattat 12267343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 17192740 - 17192570
Alignment:
Q  164 gcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccg 263  Q
    |||||||||||||| ||||| || ||||| ||||||||||||||||||   |||||||||||||||||  |||||||||||||| |||||||||||||||    
T  17192740 gcggatttttgtgtcaattccgcaggaaatacatttcctgcagattttgtcaaggatttaggttcccagatgaggtaataccattggattttaggatccg 17192641  T
Q  264 caggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaa 340  Q
    |||||||   || | ||| || ||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||    
T  17192640 caggaaa---gata-tattcgcagaaaatgtgaaattatctgca-aaaatatgaaattatttgca-gaaggaagtaa 17192570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 197 - 379
Target Start/End: Original strand, 6900800 - 6900978
Alignment:
Q  197 tttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtga 296  Q
    |||||||||||||||   |||||||||||||||||  | || |||||   |||||||||||||||||| |||||   || || ||||| |  ||||||||    
T  6900800 tttcctgcagattttgtcaaggatttaggttcccagattagataatattttaggattttaggatccgcgggaaa---gatat-atccgcaagaaatgtga 6900895  T
Q  297 aattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  || ||||||| |||||    
T  6900896 aattatccgcaggaaatgtgaaattattcgcatgaaggaagtaacattttgcgataaattttttactcatactctattaaatt 6900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 30248967 - 30249063
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  30248967 ccaactattactagaatttttagctttttctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 30249063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 2476476 - 2476557
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2476476 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaatttttt 2476557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 30249076 - 30249179
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||||||||||  ||| ||||| ||||||    
T  30249076 tatccgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaagaaagcaacgttttgcgataaattttttgcccagactctgtaaaat 30249175  T
Q  379 tcct 382  Q
    ||||    
T  30249176 tcct 30249179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 34444077 - 34444158
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  34444077 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataattttttt 34444158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 193 - 379
Target Start/End: Complemental strand, 13942821 - 13942657
Alignment:
Q  193 cacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaat 292  Q
    ||||||||||||||||||| | |||||||||| ||  || ||||||||||||| ||||||||||||||||||||||||||||                      
T  13942821 cacatttcctgcagattttgccaaggatttagattatcaggtgaggtaataccttaggattttaggatccgcaggaaatgtg------------------ 13942740  T
Q  293 gtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
        |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||    
T  13942739 ----aattatccacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttacccaggctctataaaatt 13942657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 33007025 - 33007100
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  33007025 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcct 33007100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 34846485 - 34846560
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  34846485 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccaggctctataaaattcct 34846560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 1672481 - 1672391
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  1672481 aaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 1672391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 16567912 - 16568012
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactcc 388  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||  |||  |||||||||||| || |||||    
T  16567912 aaatgtgaaattatccgcaggaaatgtgaaattattcccaggaaggaagtaacattttgcgataatttttttgcccaagctctataaaatttctgactcc 16568011  T
Q  389 g 389  Q
    |    
T  16568012 g 16568012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 21069040 - 21069148
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||| ||||||||||| |||| ||  ||||||||||||||||||||||| | || |||||||||||| | ||||||| |||||||||||||||||||||    
T  21069040 ctgcgcatttttgtgtatattccgcaagaaacacatttcctgcagattttgccaaagatttaggttcctaggtgaggttataccataggattttaggatc 21069139  T
Q  262 cgcaggaaa 270  Q
    | |||||||    
T  21069140 cacaggaaa 21069148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 32953662 - 32953591
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  32953662 aaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacattttgcgataactttttt 32953591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 35468929 - 35469001
Alignment:
Q  157 tttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  35468929 tttttctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 35469001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 21069153 - 21069232
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  ||| |||||||||||||    
T  21069153 tatctgcaggaaatgtgaaattatttccaggaaggaaataacgttttgcgataaattttttgcccagactctataaaatt 21069232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 7162078 - 7161988
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  7162078 aaatgtgaaattatccacaggaaatgtgaaattatttgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 7161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 33006938 - 33007005
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||| | |||||||||||||||    
T  33006938 ctgcggatttttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggatttaggttcc 33007005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 37552051 - 37552125
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||  |||  ||||||||||||    
T  37552051 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatt 37552125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 37654881 - 37654955
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||  |||  ||||||||||||    
T  37654881 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatt 37654955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 43228637 - 43228547
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| | |||||| ||||||||| | ||||||  |||  ||||||||||||    
T  43228637 aaatgtgaaattatctgcaagaaatatgaaattattcgcaggaaaggagtaacattttgcgattagttttttgcccaggctctataaaatt 43228547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 12267361 - 12267288
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||  |||  |||||||||||    
T  12267361 gcagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataaactttttgcccaggctctataaaat 12267288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 15675344 - 15675411
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||| | ||||||||| |||||    
T  15675344 ctgcggagttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaagttcc 15675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 42989542 - 42989613
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattt 210  Q
    ||||||||||||| | | |||||||||| |||||||||||||||| || ||||||||||||||||| |||||    
T  42989542 attactagaacttctcgctttttctgcgaatttttgtgtaaattccgcaggaaacacatttcctgcggattt 42989613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 34443974 - 34444064
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| || ||| |||| |||||||||||||| ||||||| ||  ||||  ||||||||||||||||| | |||||||||||||||    
T  34443974 attactagaatttgtagcttttcctgcggatttttgtctaaattccgcaagaaatgcatttcctgcagattttgccaaggatttaggttcc 34444064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 8214701 - 8214628
Alignment:
Q  197 tttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    |||||||||||||||   ||||||||||||||  | ||||||||||||  ||||||||||||||||||||||||    
T  8214701 tttcctgcagattttgtcaaggatttaggttcttaggtgaggtaatactttaggattttaggatccgcaggaaa 8214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 34846401 - 34846465
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||| || | ||||||||||||| |||||||| | |||||||||||||||    
T  34846401 cggatttttgtgtaaattccgcagtaaacacatttcctacagattttgccaaggatttaggttcc 34846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 37779780 - 37779835
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||    
T  37779780 gcaggaaatgtgaaattattcgctggaaggaagtaacattttacgataattttttt 37779835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 37779597 - 37779704
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    ||||| |||||| ||||||||||| |||||||| |||||| |||| ||||||        |||  |||| || | |||||||||||||||||||||||||    
T  37779597 ggggcggagccacccccagctagcctgggcactagtccaggctcaactccaattttctttgtagcaagttcagccattactagaacttttagttttttct 37779696  T
Q  164 gcggattt 171  Q
    ||||||||    
T  37779697 gcggattt 37779704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 30249077 - 30249129
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| ||||||||    
T  30249077 atccgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaa 30249129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 192894 - 192945
Alignment:
Q  344 tttgcgataaattttttatccacactctataaaattcctaactccgtcattg 395  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||| |||||    
T  192894 tttgcgataaattttttacccaaattctataaaattcctaactccgccattg 192945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 7162086 - 7162035
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||||||||||||||||||||||  || |||||||||||||| ||||||||    
T  7162086 tccgcaggaaatgtgaaattatccacaggaaatgtgaaattatttgcaggaa 7162035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 37607573 - 37607628
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||| ||||||    
T  37607573 gcaggaaatgtgaaattatttgctggaaggaagtaacattttacgataattttttt 37607628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 16567904 - 16567946
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  16567904 tccgcaggaaatgtgaaattatccgcaggaaatgtgaaattat 16567946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 43228715 - 43228666
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||||||||    
T  43228715 ctgcggatgtttatgtaaattccgcaggaaacacatttcctgcagatttt 43228666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 1672484 - 1672438
Alignment:
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||    
T  1672484 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaa 1672438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 32953670 - 32953628
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  32953670 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattat 32953628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 42989673 - 42989719
Alignment:
Q  343 ttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
    |||||| ||||||||||| |||| |||||||||||||||| ||||||    
T  42989673 ttttgcaataaattttttgtccagactctataaaattcctgactccg 42989719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 7162152 - 7162107
Alignment:
Q  166 ggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||||| |||||||||  | ||||||||||||||||||||||||    
T  7162152 ggatttttatgtaaattccacaggaaacacatttcctgcagatttt 7162107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 14832814 - 14832762
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  14832814 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 14832762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 5e-64; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 162 - 392
Target Start/End: Complemental strand, 2522015 - 2521789
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||||||||||||||||| || || |||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||| | |||||||||||||||    
T  2522015 ctgcggatttttgtgtaaagtccgcaggaaacacatttcctgtagattttatcaaggatttaggttcccaggtgaggtaatatcttaggattttaggatc 2521916  T
Q  262 cgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttta 361  Q
    |||||||||   || | |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  2521915 cgcaggaaa---gaca-tatccgcagaaaatgtgatattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaattttttg 2521820  T
Q  362 tccacactctataaaattcctaactccgtca 392  Q
     |||   ||||||||||||||  ||||||||    
T  2521819 cccatgttctataaaattcctggctccgtca 2521789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 128 - 372
Target Start/End: Original strand, 50099838 - 50100075
Alignment:
Q  128 taagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggtt 227  Q
    ||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |  |||||  ||||| ||||| ||||| |||||||||||||||    
T  50099838 taagttcaaccattactagagcttttagctttttctgcggatttttgtgtaaattccgtaggaaattcattttctgcaaattttgctaaggatttaggtt 50099937  T
Q  228 cccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgc 327  Q
    |||| |||| |||||||| |||||||||||||||||||       |  |  |||  | || ||||||||||||||| ||||||||||||||||||||||     
T  50099938 cccaggtgaagtaataccttaggattttaggatccgca-------tatatatatttgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgt 50100030  T
Q  328 aggaaggaagtaacgttttgcgataaattttttatccacactcta 372  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  50100031 aggaaggaagtaacgttttgcgataaattttttacccaaactcta 50100075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 64 - 311
Target Start/End: Original strand, 49744973 - 49745221
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    ||||| |||||||||||||||||  |||||||| |||||| ||||||||||||        ||  ||||| | | |||||||||| |||||  |||| ||    
T  49744973 ggggcggagccaaccccagctagtctgggcactagtccaggctcagctccaactttctttataacaagtctagccattactagaagttttaccttttcct 49745072  T
Q  164 gcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccg 263  Q
    |  ||||||||||||||||| |  |||||||||||| ||||||||||| | ||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  49745073 gtagatttttgtgtaaattccgtaggaaacacattttctgcagattttgccaaggatttaggttcctaggtgaggtaataccttaggattttaggatccg 49745172  T
Q  264 caggaaatgtgaaattatccgtag-aaaatgtgaaattatctgcaggaa 311  Q
    ||||||||||||||||||||| || ||||||| |||||||  |||||||    
T  49745173 caggaaatgtgaaattatccgcagaaaaatgtaaaattattcgcaggaa 49745221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 41972544 - 41972402
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||| ||||||    
T  41972544 attactagaacttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggattaaggttcccaggtgagg 41972445  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattat 281  Q
    ||||| | || ||||||||||||||||| ||||||||||||||    
T  41972444 taatatcttaagattttaggatccgcagaaaatgtgaaattat 41972402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 139 - 311
Target Start/End: Original strand, 52373747 - 52373919
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| || | ||||  ||||| ||||||||||   | ||||||||||||||| ||||||    
T  52373747 attactagaacttttaactttttctgcagatttttgtgtaaattccgcagaaaacgtatttcttgcagattttgtcagggatttaggttcccaggtgagg 52373846  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||  |||||||    
T  52373847 taataccttaggattttaggatccgcatgaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaa 52373919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 258 - 379
Target Start/End: Complemental strand, 43003209 - 43003088
Alignment:
Q  258 gatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattt 357  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  43003209 gatccgcaggaaatgttaaattatcggtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaagaagtaacgttctgcaataaattt 43003110  T
Q  358 tttatccacactctataaaatt 379  Q
    ||| |||| |||||||||||||    
T  43003109 tttgtccagactctataaaatt 43003088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 46645715 - 46645818
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  46645715 tatccgtagaaaatatgaaattatatacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttttcccagactctataaaat 46645814  T
Q  379 tcct 382  Q
    ||||    
T  46645815 tcct 46645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 4552297 - 4552400
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  4552297 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaat 4552396  T
Q  379 tcct 382  Q
    ||||    
T  4552397 tcct 4552400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 10715768 - 10715867
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||  |||||||||||    
T  10715768 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctataaaat 10715867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 10929538 - 10929637
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||  |||||||||||    
T  10929538 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctataaaat 10929637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 4728670 - 4728780
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  4728670 tatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 4728769  T
Q  379 tcctaactccg 389  Q
    ||||| |||||    
T  4728770 tcctagctccg 4728780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 32005995 - 32006105
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  32005995 tatccgtaggaaatgtgaatttatttgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaat 32006094  T
Q  379 tcctaactccg 389  Q
    || | ||||||    
T  32006095 tcatgactccg 32006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 25237608 - 25237716
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| || |||||||||||     
T  25237608 ctgcggaattttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccttatgattttaggatt 25237707  T
Q  262 cgcaggaaa 270  Q
    |||||||||    
T  25237708 cgcaggaaa 25237716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 31364137 - 31364234
Alignment:
Q  132 tccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  31364137 tccaaccattactagaaattttagtttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 31364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 40969336 - 40969449
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||  |||  |||||||||||    
T  40969336 tatccgtaggaaatgtgaaattatctgcagaaaatatgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaagctctataaaat 40969435  T
Q  379 tcctaactccgtca 392  Q
    | ||  ||||||||    
T  40969436 tgctggctccgtca 40969449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 2017441 - 2017338
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  || ||||||||    
T  2017441 tatccgtaggaaatgtgaatttatctgtaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctttataaaat 2017342  T
Q  379 tcct 382  Q
    ||||    
T  2017341 tcct 2017338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 36947550 - 36947657
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    |||||||||||||| |||||||||| ||||||| ||||||||| |||||| | ||| ||||||||||||| ||| ||||||||| |||||||||||||||    
T  36947550 ctgcggatttttgtataaattctgcaggaaacatatttcctgcggattttgccaagaatttaggttcccaggtgtggtaataccttaggattttaggatc 36947649  T
Q  262 cgcaggaa 269  Q
    ||||||||    
T  36947650 cgcaggaa 36947657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 8901817 - 8901934
Alignment:
Q  144 tagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaata 243  Q
    |||||||||||  |||| |||| |||||||||||||| || || |||||||||||||||||||||||| | |||||||||| || ||| |||||||||||    
T  8901817 tagaacttttaacttttcctgcagatttttgtgtaaactccgcaggaaacacatttcctgcagattttgccaaggatttagatttcca-gtgaggtaata 8901915  T
Q  244 ccataggattttaggatcc 262  Q
    || ||||||||||||||||    
T  8901916 ccttaggattttaggatcc 8901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 52373892 - 52373969
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||    
T  52373892 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcacagactctataaaattcct 52373969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 10058656 - 10058731
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||    
T  10058656 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcct 10058731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 50383835 - 50383978
Alignment:
Q  77 ccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtg 176  Q
    ||||||||||| |||||||||| |||| ||||||||||||       |||  ||| ||| | ||||||||||||||||| |||| |||||||| |||| |    
T  50383835 ccccagctagcctgggcactggcccaggctcagctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcggatgtttgcg 50383934  T
Q  177 taaattctgctggaaacacatttcctgcagattttactaaggat 220  Q
    |||||| ||| |||||||||||||||||||||||| | ||||||    
T  50383935 taaattttgcaggaaacacatttcctgcagattttgccaaggat 50383978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 2576284 - 2576385
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||| ||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||| ||||||  ||| ||| ||||||||    
T  2576284 tatccgtaggaaatgtaaaattatctgcagaaaatatgaaattaatcgcagaaaggaagtaacgttttgcgataatttttttgcccagactttataaaat 2576383  T
Q  379 tc 380  Q
    ||    
T  2576384 tc 2576385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 9003677 - 9003777
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactcc 388  Q
    |||||||||||||||   |||||||||||||||||||||| |||||||||||| ||||||||||| |||||| ||||  |||||||||||| || |||||    
T  9003677 aaatgtgaaattatccataggaaatgtgaaattattcgcaagaaggaagtaacattttgcgataatttttttgtccaggctctataaaatttctgactcc 9003776  T
Q  389 g 389  Q
    |    
T  9003777 g 9003777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 31364254 - 31364326
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||    
T  31364254 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccatgctctataaaatt 31364326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 10715658 - 10715755
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatt-tcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||||||  |||||||||||| | |||||||||||||||    
T  10715658 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10715755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 10929428 - 10929525
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatt-tcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||||||  |||||||||||| | |||||||||||||||    
T  10929428 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10929525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 41972420 - 41972343
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | | ||||||||||||    
T  41972420 gcagaaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgaccagattttataaaattcct 41972343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 40969223 - 40969323
Alignment:
Q  129 aagtccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    ||||||||| ||||  |||| |||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||   || |||||||||||    
T  40969223 aagtccaaccattatgagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacacattttctgcagattttgtcaatgatttaggttc 40969322  T
Q  229 c 229  Q
    |    
T  40969323 c 40969323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 1585781 - 1585862
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||| | |||| ||| ||||||||||||||| ||||||    
T  1585781 tatccgtaggaaatgtaaatttatctgcaggaaatgtgaaattattcgtacgaagaaagcaacgttttgcgataattttttt 1585862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 4728590 - 4728657
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  4728590 ctgcggatttttgagtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 4728657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 4552194 - 4552284
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||| ||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  4552194 attactagaatttttagcttttcctgcggatttgtgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 4552284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 14044462 - 14044536
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||  ||| |||||||||||||    
T  14044462 gcaggaaatgtgaaattattctcaggaaggaggtaacattttgcgataatttttttgcccatactctataaaatt 14044536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 25237721 - 25237775
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaa 354  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25237721 tatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgtgataaa 25237775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 50383987 - 50384055
Alignment:
Q  280 atccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgc 348  Q
    |||||||| ||||||||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||    
T  50383987 atccgtaggaaatgtgaaataatccgcaggaattataaaattattcgcaggaaggaagtaacgttttgc 50384055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 10058577 - 10058636
Alignment:
Q  170 ttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||    
T  10058577 ttttgtgtaaattccgcaggaaacacatttccagcagattttaccaaggatttaggttcc 10058636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 46645635 - 46645702
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||  ||||||||||    
T  46645635 ctgcggatttttgtgtaaattctgcaggaaacacatttcatgcagattttgccaagagtttaggttcc 46645702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 2017544 - 2017454
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||   |||||| ||||||||| | ||| |||||||||||    
T  2017544 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgtatttcccgcagattttgccaagtatttaggttcc 2017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 11827024 - 11826971
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  11827024 aggaaatgtgaaattattcgcaggaaggaagtaacattttacgataattttttt 11826971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 31929114 - 31929046
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttccca 231  Q
    ||||||||||  ||||||||||||  ||||||||||||||||| ||||| | |||||||||||||||||    
T  31929114 tgcggattttattgtaaattctgcaagaaacacatttcctgcaaattttgccaaggatttaggttccca 31929046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 4728677 - 4728723
Alignment:
Q  265 aggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||    
T  4728677 aggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaa 4728723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 9003669 - 9003711
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  9003669 tccgcaggaaatgtgaaattatccataggaaatgtgaaattat 9003711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 9694204 - 9694258
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttt 359  Q
    ||||||||||| |||||||||||| ||||||| |||| ||||||||||| |||||    
T  9694204 gcaggaaatgtcaaattattcgcaagaaggaaataacattttgcgataatttttt 9694258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 14044389 - 14044438
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    ||||| |||||| ||||||||| || ||||||||||||||||||||||||    
T  14044389 ctgcgaatttttatgtaaattccgcaggaaacacatttcctgcagatttt 14044438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 49745206 - 49745263
Alignment:
Q  317 aaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctata 374  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||  ||| ||||||||    
T  49745206 aaattattcgcaggaaggacgtaacattttacgataaattttttccccagactctata 49745263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 2576204 - 2576252
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||| |||||||| ||||||| || ||||||||||||||||||||||||    
T  2576204 tgcgaatttttgtataaattccgcaggaaacacatttcctgcagatttt 2576252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 9694132 - 9694180
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||| |||| ||||||||| || ||||||||||||||||||||||||    
T  9694132 tgcggaattttatgtaaattccgcaggaaacacatttcctgcagatttt 9694180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 32828281 - 32828336
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||||||| |||||||| |||||||||||||||  ||||| ||||| ||||||    
T  32828281 gcaggaaatgtaaaattatttgcaggaaggaagtaatattttgtgataattttttt 32828336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 9003607 - 9003648
Alignment:
Q  170 ttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  9003607 ttttatgtaaattccgcaggaaacacatttcctgcagatttt 9003648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 15034490 - 15034457
Alignment:
Q  250 gattttaggatccgcaggaaatgtgaaattatcc 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  15034490 gattttaggatccgcaggaaatgtgcaattatcc 15034457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 36947650 - 36947711
Alignment:
Q  325 cgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaact 386  Q
    |||||||||||| ||  |||||||||||| |||||| ||||  || ||||||||||||||||    
T  36947650 cgcaggaaggaaatattgttttgcgataatttttttgtccaagctttataaaattcctaact 36947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 1585718 - 1585762
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattc 183  Q
    |||||||||| |||||| |||| |||| |||||||||||||||||    
T  1585718 attactagaatttttagcttttcctgcagatttttgtgtaaattc 1585762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 10715769 - 10715821
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  10715769 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 10715821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 10929539 - 10929591
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  10929539 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 10929591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 11827133 - 11827101
Alignment:
Q  139 attactagaacttttagttttttctgcggattt 171  Q
    ||||||||||||||||| |||||||||||||||    
T  11827133 attactagaacttttagctttttctgcggattt 11827101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 32005923 - 32005967
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattc 183  Q
    |||| ||||| |||||| |||| ||||||||||||||||||||||    
T  32005923 attattagaatttttagcttttcctgcggatttttgtgtaaattc 32005967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 161 - 382
Target Start/End: Complemental strand, 2836285 - 2836068
Alignment:
Q  161 tctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggat 260  Q
    |||||||||||| |||||||||| || ||||| ||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||    
T  2836285 tctgcggattttcgtgtaaattccgcaggaaatacatttcctgcagattttgtcaaggatttaggttcccaggtgaggtaataccataggattttaggat 2836186  T
Q  261 ccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||||||||| ||     ||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  2836185 ccgcaggaaaagt----atatcgacaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgtcttgtaataaatttttt 2836090  T
Q  361 atccacactctataaaattcct 382  Q
       || ||||||||||||||||    
T  2836089 gctcagactctataaaattcct 2836068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 23663763 - 23663660
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  23663763 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttatccaggctctataaaat 23663664  T
Q  379 tcct 382  Q
    ||||    
T  23663663 tcct 23663660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 9696167 - 9696267
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  9696167 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaat 9696266  T
Q  379 t 379  Q
    |    
T  9696267 t 9696267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 2941334 - 2941437
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  2941334 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 2941433  T
Q  379 tcct 382  Q
    ||||    
T  2941434 tcct 2941437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 281 - 382
Target Start/End: Complemental strand, 10397811 - 10397710
Alignment:
Q  281 tccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattc 380  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  10397811 tccgtaggaaatgtgaaattatctgttggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattc 10397712  T
Q  381 ct 382  Q
    ||    
T  10397711 ct 10397710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 34249017 - 34248916
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  34249017 tatccgtagaaaatatgaaattatctgcaggaaatgtgaaattatccgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 34248918  T
Q  379 tc 380  Q
    ||    
T  34248917 tc 34248916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 15122155 - 15122265
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||| ||||||||||||    
T  15122155 tatccgtaggaaatgtaaaattatctgcagaaaatgtgaaattattcgcagaaagaaagtaacgttttgcgataaattttttgcccaaactctataaaat 15122254  T
Q  379 tcctaactccg 389  Q
    |||| ||||||    
T  15122255 tcctgactccg 15122265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 339344 - 339493
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgag- 237  Q
    ||||||| ||||||||| |||| ||| |||||||||||||||||| |  ||||| |||||||||||||||||||| ||||||||||||||||| |||||     
T  339344 attactaaaacttttagcttttcctgtggatttttgtgtaaattccgtaggaaatacatttcctgcagattttaccaaggatttaggttcccaggtgagg 339443  T
Q  238 -------gtaataccataggattttaggatccgcaggaaatgtgaaatta 280  Q
           ||||||||||||  |||||| ||||||||||||||||||||||    
T  339444 taatagtgtaataccatagacttttagaatccgcaggaaatgtgaaatta 339493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 31188354 - 31188215
Alignment:
Q  237 ggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaa 336  Q
    ||||||||| ||||||||||||||||||||||||   || || ||||  ||||||| |||||||||| | || |||||||||||||||| ||||||||||    
T  31188354 ggtaataccttaggattttaggatccgcaggaaa---gatat-atcctcagaaaatttgaaattatccgtagaaaatgtgaaattattcacaggaaggaa 31188259  T
Q  337 gtaacgttttgcgataaattttttatccacactctataaaattc 380  Q
    ||||||||||||||||| ||||||  |||  |||||||||||||    
T  31188258 gtaacgttttgcgataatttttttgcccaggctctataaaattc 31188215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 9046919 - 9046819
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||  ||| ||||||||||||    
T  9046919 tatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcaaaggaaggaaataacgttttccgataaattttttgcccaaactctataaaat 9046820  T
Q  379 t 379  Q
    |    
T  9046819 t 9046819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 14938921 - 14938813
Alignment:
Q  284 gtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattccta 383  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||  |||  |||||||||||| ||     
T  14938921 gtaggaaatgtgaaattatctgcaggaaatgtgaaattattcccaggaagaaagtaacattttgcgataatttttttgcccaagctctataaaatttctg 14938822  T
Q  384 actccgtca 392  Q
    |||||||||    
T  14938821 actccgtca 14938813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 34249126 - 34249030
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||    
T  34249126 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgccaagggtttaggttcc 34249030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 15529058 - 15529168
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||  | |  |||||||||||    
T  15529058 tatctgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaagaagtaatgttttgcgataaattttttgcctaggctctataaaat 15529157  T
Q  379 tcctaactccg 389  Q
    |||| ||||||    
T  15529158 tcctgactccg 15529168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 34188856 - 34188954
Alignment:
Q  204 cagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    |||||||||| || ||||||| ||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  34188856 cagattttaccaatgatttagattctcaggtgaagtaataccttaggattttaggatccgcaggaaatgtgaaattatccgcaggaaatgtgaaattat 34188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 1781019 - 1780944
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||    
T  1781019 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttatgcccagactctataaaattcct 1780944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 28614406 - 28614327
Alignment:
Q  281 tccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  28614406 tccgtaggaaatgtgaaattatcagcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttttt 28614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 14939017 - 14938934
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggattt 222  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||||||||||||||| || |||||||    
T  14939017 attactagaacttttagttttttatgctgatttttatgtaaattccgcaggaaacacatttcctgcagattttgcttaggattt 14938934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 2960790 - 2960864
Alignment:
Q  285 tagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttt 359  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||| |||||    
T  2960790 tagaaaatgtgaaattatccgcaggaaatgtgaaattattcgcaagaaggaagtaacattttgcaataatttttt 2960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 1781135 - 1781039
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| ||||||| || |||||| |||| ||| ||||||||||||||||||  | |||||||||||||||||||||||| | |||||||||||||||    
T  1781135 ccaaccattactataaattttagcttttcctgtggatttttgtgtaaattcctcaggaaacacatttcctgcagattttgccaaggatttaggttcc 1781039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 10397905 - 10397809
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| ||||| |||| |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||| ||||| | |||||||||||||||    
T  10397905 ccaaccattacgagaatttttagcttttcctgcggattgttgtgtaaattccgcaggaaacacatttcctgcatattttgccaaggatttaggttcc 10397809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 23663872 - 23663776
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| ||| ||| || |||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||| |||||    
T  23663872 ccaaccattgctataatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttatgttcc 23663776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 31200199 - 31200059
Alignment:
Q  237 ggtaataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaa 336  Q
    ||||||||| ||||||||||| ||||||||| ||   || || ||| | || ||||||||||||||| |  | |||||||||||||||||||||||||||    
T  31200199 ggtaataccttaggattttagaatccgcaggtaa---gatat-atctgcaggaaatgtgaaattatccgtggaaaatgtgaaattattcgcaggaaggaa 31200104  T
Q  337 gtaacgtttt-gcgataaattttttatccacactctataaaattc 380  Q
    |||||||||| ||||||| ||||||  |||  |||||||||||||    
T  31200103 gtaacgttttagcgataatttttttgcccatgctctataaaattc 31200059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 339476 - 339560
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccg 389  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||  |||  |||||||||||| ||| |||||    
T  339476 gcaggaaatgtgaaattaattgcaggaaggaagtaacattttgcgataaattttttgcccaagctctataaaatttctagctccg 339560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 34188911 - 34188991
Alignment:
Q  280 atccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||| ||  || |||||||||||||| |||||||||    
T  34188911 atccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgcaagagagaggtaacgttttgcgacaaatttttt 34188991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 2941254 - 2941321
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||| |||||||||  || |||||||||||||||||||||||| | |||||||||||||||    
T  2941254 ctgcggattttagtgtaaatttcgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 2941321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 9696087 - 9696154
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||| ||||||||||||||||| || ||||||| |||||||||||||||| | |||||||||||||||    
T  9696087 ctgcagatttttgtgtaaattccgcaggaaacatatttcctgcagattttgccaaggatttaggttcc 9696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 15122075 - 15122142
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||||||| | ||||||||| |||||    
T  15122075 ctgcggatttgtgtctaaattctgcaggaaacacatttcctgcagattttgccaaggatttacgttcc 15122142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 9047109 - 9046932
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    ||||| |||||| ||||||||||| |||||    |||||||||||||| ||||       ||| |||||||||| |||||||||| |||||| |||| ||    
T  9047109 ggggcggagccacccccagctagcctgggctagtgtccagactcagcttcaactttctttgtagtaagtccaaccattactagaatttttagcttttcct 9047010  T
Q  164 gcggattt------------ttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||            ||||||| |||| || ||||||||||||||||||||||||   |||||||||||||||    
T  9047009 gcggatttacctgtagatttttgtgtagattccgcaggaaacacatttcctgcagattttgtcaaggatttaggttcc 9046932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 15528978 - 15529045
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||| ||||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  15528978 ctgcggatgtttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 15529045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 2960695 - 2960758
Alignment:
Q  141 tactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgc 204  Q
    ||||||||||||||| |||| ||||||||| || ||||||||  || | |||||||||||||||    
T  2960695 tactagaacttttagcttttcctgcggattattatgtaaatttcgcagaaaacacatttcctgc 2960758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 28614406 - 28614355
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||| |||||||||||||||||| | |||||||||||||||||  |||||||    
T  28614406 tccgtaggaaatgtgaaattatcagcagaaaatgtgaaattattcgcaggaa 28614355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 10397818 - 10397760
Alignment:
Q  253 tttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||| |||| |||||||||||||||||| || | ||||||||||||||  |||||||    
T  10397818 tttaggttccgtaggaaatgtgaaattatctgttggaaatgtgaaattattcgcaggaa 10397760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 9696168 - 9696220
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  9696168 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 9696220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 7e-54; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 139 - 360
Target Start/End: Complemental strand, 4642177 - 4641960
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||   | ||||| ||||||| ||||||||||   ||||||||||||| | | ||||||    
T  4642177 attactagaacttttagcttttcctgcggatttttatgtaaatttcacaggaaatacatttcttgcagattttgtcaaggatttaggtttcgaggtgagg 4642078  T
Q  239 taataccataggattttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagt 338  Q
    ||||||| ||||||||||||||||||||||||   || | |||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  4642077 taataccttaggattttaggatccgcaggaaa---gata-tatccgcaggaaatatgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagt 4641982  T
Q  339 aacgttttgcgataaatttttt 360  Q
    |||||||||||||  |||||||    
T  4641981 aacgttttgcgattgatttttt 4641960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 134 - 281
Target Start/End: Original strand, 24646056 - 24646203
Alignment:
Q  134 caactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatg 233  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||||| |||| |  |||||||||||||||||||||||| | ||||||||||||||||| |    
T  24646056 caaccattactagaacttttagcttttcctgtggatttttgtgtacattccgtaggaaacacatttcctgcagattttgccaaggatttaggttcccagg 24646155  T
Q  234 tgaggtaataccataggattttaggatccgcaggaaatgtgaaattat 281  Q
    |||||||||||| | ||||||| ||||||||||||||| |||||||||    
T  24646156 tgaggtaatacctttggatttttggatccgcaggaaatttgaaattat 24646203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 24745450 - 24745562
Alignment:
Q  169 tttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcagga 268  Q
    |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||   | ||||||||||||| ||||||||||||||||||||||    
T  24745450 tttttgtgtaaattctgcaggaaacacattttctgcagattttgccaaggatttaggttttaaggtgaggtaataccctaggattttaggatccgcagga 24745549  T
Q  269 aatgtgaaattat 281  Q
    |||||||||||||    
T  24745550 aatgtgaaattat 24745562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 279 - 395
Target Start/End: Complemental strand, 37153994 - 37153878
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  37153994 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 37153895  T
Q  379 tcctaactccgtcattg 395  Q
    ||||  ||||| |||||    
T  37153894 tcctggctccgccattg 37153878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 25007575 - 25007678
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  |||||||||||    
T  25007575 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaat 25007674  T
Q  379 tcct 382  Q
    ||||    
T  25007675 tcct 25007678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 14727441 - 14727541
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||  |||||||||||    
T  14727441 tatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaat 14727540  T
Q  379 t 379  Q
    |    
T  14727541 t 14727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 9527053 - 9527176
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgagg 238  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||   | |||||||||| ||||||||||||| | ||||||||||||||||| ||||||    
T  9527053 attactagaacttttagcttttcctgcggattttggtgtaaatttcacaggaaacacatctcctgcagattttgccaaggatttaggttcccaggtgagg 9527152  T
Q  239 taataccataggattttaggatcc 262  Q
    ||||| | ||||||||||||||||    
T  9527153 taatatcttaggattttaggatcc 9527176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 27460792 - 27460871
Alignment:
Q  281 tccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27460792 tccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaatttttt 27460871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 44305523 - 44305626
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  |||  |||||||||||    
T  44305523 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaat 44305622  T
Q  379 tcct 382  Q
    ||||    
T  44305623 tcct 44305626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 1428423 - 1428320
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||  |||  |||||||||||    
T  1428423 tatccgtaggaaatgtgaatctatctgcagaaaatgtgaaattattcgtaggaaggaagtaacgttttgcggtaaattttttgcccaggctctataaaat 1428324  T
Q  379 tcct 382  Q
    ||||    
T  1428323 tcct 1428320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 27584120 - 27584029
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttccc 230  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||    
T  27584120 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttccc 27584029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 27584017 - 27583918
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||   ||  |||||||||||    
T  27584017 tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcag----gaagtaacgttttgcgataaattttttgctcaggctctataaaat 27583922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 33468954 - 33468872
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||    
T  33468954 tatctgtaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcct 33468872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 25011541 - 25011441
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| |||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||| ||||||  ||| | ||||||||||    
T  25011541 tatccgtaggaaatgtgaaattatctgcagaaaatgcaaaattattcgcatgaaggaagtaacgttttgcgataatttttttgcccagattctataaaat 25011442  T
Q  379 t 379  Q
    |    
T  25011441 t 25011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 25011649 - 25011553
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||| || |||||||||||| ||||||||||| | |||||||||||||||    
T  25011649 ccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacattttctgcagattttgccaaggatttaggttcc 25011553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 31844617 - 31844542
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  31844617 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagactctataaaattcct 31844542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 4774093 - 4774183
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||  ||| |||||||||||||    
T  4774093 aaatgtgaaattatccgcaagaaatgtgaaattattcgcaggaagaaagtaacattttgcgataatttttttgcccagactctataaaatt 4774183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 6802207 - 6802072
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgca----gattttactaaggatttaggttcccatgt 234  Q
    ||||||||||||| | | |||| |||||||||||| |||||||||  | |||||||||||||||||     |||||| | ||||||||||||||||| ||    
T  6802207 attactagaacttctcgcttttcctgcggatttttctgtaaattccacaggaaacacatttcctgcctgcggattttgccaaggatttaggttcccaggt 6802108  T
Q  235 gaggtaataccataggattttaggatccgcaggaaa 270  Q
    ||||||||||| || ||||||||||||| |||||||    
T  6802107 gaggtaataccttacgattttaggatcctcaggaaa 6802072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 27460698 - 27460794
Alignment:
Q  133 ccaactattactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||| |||||||||| |||||| ||||  ||||||||||||||||||||| |  |||||||||||||||||||||||| | |||||||||||||||    
T  27460698 ccaaccattactagaatttttagcttttcttgcggatttttgtgtaaattccgaaggaaacacatttcctgcagattttgccaaggatttaggttcc 27460794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 34459253 - 34459345
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactccgtca 392  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||  ||||||||    
T  34459253 tatctgtaggaaatgtgaaattattcgtgggaaggaagtaacgttttgtgataaattttttgcccagactctataaaattcctggctccgtca 34459345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 34459141 - 34459248
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatcc 262  Q
    |||||||| ||||| || ||| |  |||||||||||||||||||||||| | ||||||||| |||| || ||||||||||||| ||||||||||||||||    
T  34459141 tgcggattgttgtggaatttccgtaggaaacacatttcctgcagattttgccaaggatttaagttctcaggtgaggtaataccttaggattttaggatcc 34459240  T
Q  263 gcaggaaa 270  Q
    ||| ||||    
T  34459241 gcaagaaa 34459248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 9527196 - 9527268
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||| |||||||||||||    
T  9527196 aggaaatgtgaaattattcgcaggaagacagtaacgttttgcgataaattttttgcccatactctataaaatt 9527268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 6802067 - 6801988
Alignment:
Q  300 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  6802067 tatctgcaggaaatgtgcaattatccgcatgtaggaaataacgttttgcgataaattttttgtccaaactctataaaatt 6801988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 37154097 - 37154007
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  37154097 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 37154007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 44305420 - 44305510
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| || |||||   |||||||||||||||| | |||||||||||||||    
T  44305420 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 44305510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 44239041 - 44238875
Alignment:
Q  64 ggggcagagccaaccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttct 163  Q
    ||||| |||||| ||||||||||  |||||||| | |||| ||||||||||||       |||  ||| ||| | |||||||||| |||||| ||||  |    
T  44239041 ggggcggagccacccccagctagtctgggcactagcccaggctcagctccaactttctttgtagaaagcccagccattactagaaattttagcttttctt 44238942  T
Q  164 gcggatttttgt-gtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||| | ||||||||||| ||||||||||||| || ||||||| | |||||||||||||||    
T  44238941 gcggattttttttgtaaattctgcaggaaacacatttcttgtagattttgccaaggatttaggttcc 44238875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 49898526 - 49898599
Alignment:
Q  306 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| |||||||| ||||    
T  49898526 caggaaatgtgaaattattcgcaggaaggacgtaacattttgcgataaattttttgcccagactctatataatt 49898599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 4773953 - 4774085
Alignment:
Q  77 ccccagctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagttttttctgcggatttttgtg 176  Q
    ||||||||||| |||||||| | ||||||||| ||||||        |||  ||| ||| | ||||||||||||||||| |||| |||||||| ||| ||    
T  4773953 ccccagctagcctgggcactagcccagactcaactccaattttttttgtagcaagcccagccattactagaacttttagcttttcctgcggatatttatg 4774052  T
Q  177 taaattctgctggaaacacatttcctgcagatt 209  Q
    ||||||| || ||||||||||||||||||||||    
T  4774053 taaattccgcaggaaacacatttcctgcagatt 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 6331804 - 6331879
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||   ||  |||||||||||||||    
T  6331804 aggaaatgtgaaattatttgaaggaaggaagtaacgttttgcgataaattttttgctcatgctctataaaattcct 6331879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 14727361 - 14727428
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  14727361 ctgcggagttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 14727428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31844704 - 31844637
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  31844704 ctgcagatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 31844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 8239411 - 8239464
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  8239411 aggaaatgtgaaattattcataggaaggaagtaacgttttgcgataaatttttt 8239464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 25007472 - 25007561
Alignment:
Q  139 attactagaacttttagttttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttc 228  Q
    |||||||||| |||||| |||| |||||||||||||||||||||| ||  ||||   |||||||||||||||| | ||||||||||||||    
T  25007472 attactagaatttttagcttttcctgcggatttttgtgtaaattccgcaagaaatgtatttcctgcagattttgccaaggatttaggttc 25007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 48940416 - 48940327
Alignment:
Q  272 gtgaaattatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttta 361  Q
    ||||||||||| | || |||||||||||||||||||  |||||||||||||||||||| || ||| ||| ||||||| |||| |||||||    
T  48940416 gtgaaattatctgcaggaaatgtgaaattatctgcaaaaaatgtgaaattattcgcagtaaagaaataaagttttgcaataattttttta 48940327  T

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Target: chr1; HSP #35
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 49898442 - 49898515
Alignment:
Q  197 tttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    ||||||||||||||| | |||||||||||| || | ||||||||||||| ||||||||||||||||||| ||||    
T  49898442 tttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcaagaaa 49898515  T

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Target: chr1; HSP #36
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 6331720 - 6331784
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||| | |||||||||||||||    
T  6331720 cggatttttgtgtaaattccgcaggaaacacatttcctacagattttgccaaggatttaggttcc 6331784  T

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Target: chr1; HSP #37
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 48940499 - 48940365
Alignment:
Q  163 tgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatcc 262  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||||   |||||||||| ||  || ||||||||||| | |   |||     |||     
T  48940499 tgcggatttttgtgtaaattccgcaggaaacacatttcatgcagattttgtcaaggatttagcttttcaggtgaggtaataacgtgaaatt-----atct 48940405  T
Q  263 gcaggaaatgtgaaattatccgtagaaaatgtgaaattat 302  Q
    |||||||||||||||||||| | | |||||||||||||||    
T  48940404 gcaggaaatgtgaaattatctgcaaaaaatgtgaaattat 48940365  T

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Target: chr1; HSP #38
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 24646185 - 24646262
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    ||||||||| |||||||||||||| |||||||||||| ||||| ||||| ||||||  |||  |||||||||||||||    
T  24646185 gcaggaaatttgaaattattcgcatgaaggaagtaacattttgagataatttttttgcccaggctctataaaattcct 24646262  T

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Target: chr1; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 24745544 - 24745619
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcct 382  Q
    |||||||||||||||||||||||| |||| |||||||   ||||||||| ||||||  ||| ||||||||||||||||    
T  24745544 gcaggaaatgtgaaattattcgcatgaagaaagtaac--attgcgataatttttttgcccagactctataaaattcct 24745619  T

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Target: chr1; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 388
Target Start/End: Complemental strand, 44238835 - 44238740
Alignment:
Q  289 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaattcctaactcc 388  Q
    ||||||||||||||| ||||||||||||||| |||||||    | |||||||| |||| |||||||| |||||  || ||||||||||||| || |||||    
T  44238835 aaatgtgaaattatccgcaggaaatgtgaaaatattcgc----atgaagtaacattttacgataaatattttacacagactctataaaatttctgactcc 44238740  T

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Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 8239322 - 8239391
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacat--ttcctgcagattttactaaggatttaggttcc 229  Q
    |||||||||||||||||||||| || ||||| | ||  |||||||||||||| | |||||||||||||||    
T  8239322 ctgcggatttttgtgtaaattccgcaggaaatatatatttcctgcagattttgccaaggatttaggttcc 8239391  T

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Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 26686444 - 26686400
Alignment:
Q  247 taggattttaggatccgcaggaaatgtgaaattatccgtagaaaa 291  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||    
T  26686444 taggattttaggatccgcaggaaatgtgcaattttccgcagaaaa 26686400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 4774085 - 4774136
Alignment:
Q  260 tccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||||||||||||||||||||||| |  ||||||||||||||  |||||||    
T  4774085 tccgcaggaaatgtgaaattatccgcaagaaatgtgaaattattcgcaggaa 4774136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 33169300 - 33169257
Alignment:
Q  247 taggattttaggatccgcaggaaatgtgaaattatccgtagaaa 290  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||    
T  33169300 taggatattaggatccgcaggaaatgtgcaattatccgcagaaa 33169257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 27460785 - 27460843
Alignment:
Q  253 tttaggatccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    |||||| |||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  27460785 tttaggttccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 27460843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 27584016 - 27583964
Alignment:
Q  259 atccgcaggaaatgtgaaattatccgtagaaaatgtgaaattatctgcaggaa 311  Q
    ||||| |||||||||||||||||| | || ||||||||||||||  |||||||    
T  27584016 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 27583964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 1807 - 1910
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  1807 tatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaat 1906  T
Q  379 tcct 382  Q
    ||||    
T  1907 tcct 1910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 1730 - 1794
Alignment:
Q  165 cggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    ||||||||||||||||||  || |||||||||||||||||||||||| | ||| ||||| |||||    
T  1730 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 1794  T

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Target: scaffold0075 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 11635 - 11738
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||   ||||||||||    
T  11635 tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggttctataaaat 11734  T
Q  379 tcct 382  Q
    ||||    
T  11735 tcct 11738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 7022 - 7131
Alignment:
Q  279 tatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaat 378  Q
    ||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||  |||   ||||||||||    
T  7022 tatccgtaggaaatgtgaatttatcagcaggaaatgtaaaattattcgtaggaaggaagtaacg-tttgcgataaattttttgcccaggttctataaaat 7120  T
Q  379 tcctaactccg 389  Q
    ||||| |||||    
T  7121 tcctagctccg 7131  T

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Target: scaffold0075; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 6840 - 7009
Alignment:
Q  61 tctggggcagagccaacccca-gctagcttgggcactggtccagactcagctccaacnnnnnnngtactaagtccaactattactagaacttttagtttt 159  Q
    |||||||| |||||  ||||| |||||| |||||||| | ||||||| |||||||||       |||  ||| || || |||||||||| |||||| |||    
T  6840 tctggggcggagcctcccccaagctagcctgggcactagcccagacttagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 6939  T
Q  160 ttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    | ||||||||| |||||||||||| |  |||||  ||||||||||||||||| | |||||||||||||||    
T  6940 tcctgcggattattgtgtaaattccgaaggaaatgcatttcctgcagattttgccaaggatttaggttcc 7009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 11550 - 11622
Alignment:
Q  157 tttttctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcc 229  Q
    |||| ||||||||| |||||||||||| || | |||  ||||||||||||||||| | |||||||||||||||    
T  11550 ttttcctgcggattattgtgtaaattccgcagaaaatgcatttcctgcagattttgccaaggatttaggttcc 11622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 109383 - 109264
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatc 261  Q
    ||||| |||||||||||||||| || | |||||||| | ||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  109383 ctgcgaatttttgtgtaaattccgcagaaaacacatgttctgcagattttgctaagaatttaggttcccaggtgagataataccataggattttaggatc 109284  T
Q  262 cgcaggaaatgtgaaattat 281  Q
    | ||||||| ||||||||||    
T  109283 cacaggaaacgtgaaattat 109264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 112271 - 112193
Alignment:
Q  192 acacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaggaaa 270  Q
    |||||||| ||||||||| | ||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  112271 acacattttctgcagattctgctaagaatttaggttcccagatgaggtaataccataggattttaggatccgcaggaaa 112193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 109281 - 109198
Alignment:
Q  306 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaat-tttttatccacactctataaaattcctaactcc 388  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||  |||||| ||||| ||| ||||    
T  109281 caggaaacgtgaaattattcgcaggaaggaagtaatgttttgcaataaatatttttgtccaggctctatgaaatttctagctcc 109198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 109481 - 109441
Alignment:
Q  76 accccagctagcttgggcactggtccagactcagctccaac 116  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  109481 accccagctagcttgggcactagtccaggctcagctccaac 109441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 112179 - 112128
Alignment:
Q  309 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttt 360  Q
    |||| ||||||||||| ||||||||||||||| ||||||| |||||| ||||    
T  112179 gaaacgtgaaattatttgcaggaaggaagtaatgttttgcaataaatatttt 112128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 4217 - 4289
Alignment:
Q  307 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttatccacactctataaaatt 379  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||  ||||||||||||    
T  4217 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 4142 - 4191
Alignment:
Q  162 ctgcggatttttgtgtaaattctgctggaaacacatttcctgcagatttt 211  Q
    |||||||| ||| ||||||||| |  ||||||||||||||||||||||||    
T  4142 ctgcggatgtttatgtaaattccgtaggaaacacatttcctgcagatttt 4191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 20980 - 20943
Alignment:
Q  247 taggattttaggatccgcaggaaatgtgaaattatccg 284  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20980 taggattttaggatccgcaggaaatgtgcaattatccg 20943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 20964 - 20928
Alignment:
Q  305 gcaggaaatgtgaaattattcgcaggaaggaagtaac 341  Q
    |||||||||||| |||||| |||||||||||||||||    
T  20964 gcaggaaatgtgcaattatccgcaggaaggaagtaac 20928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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