View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7715_low_5 (Length: 506)

Name: NF7715_low_5
Description: NF7715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7715_low_5
NF7715_low_5
[»] chr2 (8 HSPs)
chr2 (19-503)||(44793291-44793775)
chr2 (16-485)||(24806763-24807234)
chr2 (16-379)||(22300375-22300739)
chr2 (132-485)||(22299425-22299779)
chr2 (110-250)||(44792585-44792725)
chr2 (16-250)||(18535781-18536016)
chr2 (16-250)||(24808619-24808855)
chr2 (78-250)||(31974034-31974207)
[»] chr5 (7 HSPs)
chr5 (16-485)||(29950959-29951430)
chr5 (16-251)||(244917-245153)
chr5 (16-231)||(29949576-29949792)
chr5 (148-250)||(21352698-21352801)
chr5 (132-250)||(38936687-38936806)
chr5 (132-250)||(16780582-16780699)
chr5 (157-220)||(21352606-21352670)
[»] chr4 (14 HSPs)
chr4 (16-485)||(15018119-15018589)
chr4 (19-250)||(11098469-11098702)
chr4 (44-250)||(42872936-42873142)
chr4 (87-248)||(18281296-18281457)
chr4 (16-251)||(15019759-15019995)
chr4 (16-250)||(9399098-9399333)
chr4 (16-250)||(13518439-13518674)
chr4 (87-250)||(21377171-21377334)
chr4 (44-250)||(22473649-22473855)
chr4 (16-250)||(39488629-39488864)
chr4 (35-249)||(13517922-13518137)
chr4 (246-338)||(19459185-19459277)
chr4 (237-485)||(19457336-19457584)
chr4 (115-250)||(24663997-24664135)
[»] chr7 (9 HSPs)
chr7 (16-485)||(40998698-40999168)
chr7 (16-250)||(9647414-9647649)
chr7 (16-250)||(23446632-23446867)
chr7 (16-247)||(7842649-7842881)
chr7 (16-251)||(41000557-41000794)
chr7 (16-249)||(9595915-9596149)
chr7 (16-249)||(9646878-9647112)
chr7 (171-252)||(24790090-24790170)
chr7 (171-250)||(24790151-24790229)
[»] chr1 (12 HSPs)
chr1 (16-485)||(20189276-20189746)
chr1 (49-250)||(40553873-40554074)
chr1 (110-251)||(40554628-40554769)
chr1 (16-250)||(36233278-36233513)
chr1 (124-250)||(31390119-31390245)
chr1 (16-246)||(24157532-24157763)
chr1 (26-250)||(36233845-36234070)
chr1 (16-250)||(20190909-20191144)
chr1 (16-250)||(48462776-48463010)
chr1 (16-217)||(48463836-48464035)
chr1 (196-250)||(31390560-31390614)
chr1 (148-250)||(20759076-20759175)
[»] scaffold0180 (1 HSPs)
scaffold0180 (19-251)||(11281-11512)
[»] chr8 (8 HSPs)
chr8 (19-250)||(17857133-17857364)
chr8 (19-251)||(23016577-23016809)
chr8 (110-250)||(23016334-23016474)
chr8 (16-251)||(8366076-8366312)
chr8 (16-247)||(17278154-17278385)
chr8 (32-245)||(17277384-17277598)
chr8 (181-312)||(17277585-17277716)
chr8 (171-251)||(6778289-6778369)
[»] scaffold0139 (1 HSPs)
scaffold0139 (24-250)||(4195-4421)
[»] scaffold0321 (1 HSPs)
scaffold0321 (19-250)||(5190-5421)
[»] scaffold0002 (1 HSPs)
scaffold0002 (73-250)||(375245-375422)
[»] chr3 (11 HSPs)
chr3 (16-250)||(23460172-23460407)
chr3 (16-250)||(5554270-5554505)
chr3 (16-250)||(5553168-5553403)
chr3 (16-250)||(16346604-16346839)
chr3 (16-250)||(47418455-47418690)
chr3 (16-250)||(25531606-25531841)
chr3 (16-222)||(16022631-16022838)
chr3 (16-250)||(47566446-47566680)
chr3 (26-100)||(32570600-32570674)
chr3 (148-251)||(2683454-2683557)
chr3 (246-286)||(16020185-16020225)
[»] scaffold0094 (1 HSPs)
scaffold0094 (19-248)||(13381-13610)
[»] scaffold0025 (1 HSPs)
scaffold0025 (16-250)||(54826-55062)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-250)||(563-799)
[»] scaffold0013 (1 HSPs)
scaffold0013 (16-248)||(241018-241251)
[»] scaffold0146 (1 HSPs)
scaffold0146 (50-250)||(31561-31762)
[»] scaffold0026 (2 HSPs)
scaffold0026 (16-251)||(86552-86784)
scaffold0026 (148-250)||(673-776)
[»] scaffold0269 (2 HSPs)
scaffold0269 (16-88)||(1882-1954)
scaffold0269 (132-252)||(1964-2083)
[»] scaffold0096 (1 HSPs)
scaffold0096 (132-248)||(22371-22488)
[»] scaffold0021 (2 HSPs)
scaffold0021 (148-251)||(17626-17730)
scaffold0021 (148-251)||(27157-27261)
[»] chr6 (2 HSPs)
chr6 (181-250)||(12037064-12037133)
chr6 (183-250)||(12036986-12037053)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 44793291 - 44793775
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||||||    
T  44793291 atatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctc 44793389  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  44793390 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattatt 44793489  T
Q  218 cttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaacaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  44793490 cttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcgaaaacaa 44793589  T
Q  318 ttatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggacata 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||| |||    
T  44793590 ttatattgaatccatcacatgtagctttaaatttaaagagcacttcacttttattggaagaatttttttgtttttcattcccttttgattcgtggaaata 44793689  T
Q  418 atcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttctctcctttttctcttctt 503  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44793690 atctttgtttcgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttctctcctttttctcttctt 44793775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 24806763 - 24807234
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||    
T  24806763 taaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccggagc 24806862  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||| ||||||| | |||||||| || || |||||| ||||||||||||| ||||||||| ||    
T  24806863 tccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttat 24806962  T
Q  215 -attcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaa 313  Q
     |||||||| ||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24806963 tattcttgtcaagagagagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaa 24807062  T
Q  314 acaattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtgga 413  Q
    |||| | |||  |||||||||||||||||||||| |||| || || ||||||||||||||||||||             ||| | |||||||||  ||||    
T  24807063 acaaatctatgaaatccatcacatgtaactttaactttagagggctcttcacttttattggaagaatttgttttctcttcatccacttttgatttatgga 24807162  T
Q  414 cataatcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    ||| ||| ||||||| ||||||||||||| ||||||| ||||| |||||| ||||||| ||  |||||||||    
T  24807163 catgatcatcgttccaaatctcataatttccttccacctgttgggaaaaagtttcttcgttctctttgtttc 24807234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 22300375 - 22300739
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  | ||||||    
T  22300375 taaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaattccgtaagctttccaacaagttaaagatcacctcaaacggacatccagagc 22300474  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaat 214  Q
    ||  |||||    || |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| ||||| |||| |    
T  22300475 tccggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttatt 22300574  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaa 314  Q
    |||||||| ||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22300575 attcttgtcaagagagagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaa 22300674  T
Q  315 caattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaa 379  Q
    ||| | ||| ||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||    
T  22300675 caaatctatggaatccatcacatgtaactttaactttagagagctcatcacttttattggaagaa 22300739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 132 - 485
Target Start/End: Complemental strand, 22299779 - 22299425
Alignment:
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggag 230  Q
    |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| ||||| |||| ||||||||| ||| |||    
T  22299779 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattcttgtcaagagag 22299680  T
Q  231 aacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaacaattatattgaatcc 330  Q
    |  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||    
T  22299679 agaattttaggatcacatcatactctccatcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaacaaatctatggaatcc 22299580  T
Q  331 atcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggacataatcttcgttccga 430  Q
    ||||||||||||||||| |||| ||||| | ||||||||||||||||||             ||| | |||||||||  ||||||| ||| ||||||| |    
T  22299579 atcacatgtaactttaactttagagagctcatcacttttattggaagaatttgttttcttttcatccacttttgatttatggacatgatcatcgttccaa 22299480  T
Q  431 atctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||  |||||||||    
T  22299479 atctcataatttccttccacctgttgagaaaaagtttcttcattctctttgtttc 22299425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 44792725 - 44792585
Alignment:
Q  110 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  44792725 cagagctctagatatgatgaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 44792626  T
Q  210 ttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  44792625 ttattattcttgtaaagggagaacatcttaggatcacatca 44792585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 18535781 - 18536016
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  18535781 taaatattccgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 18535880  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  18535881 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttatt 18535980  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| ||||  || ||||||||||||||    
T  18535981 attcttttcaagagagagaatattaggatcacatca 18536016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 24808619 - 24808855
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  | | ||||    
T  24808619 taaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatccggagc 24808718  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactt-taa 213  Q
    || ||||||    || |||||||||| | || ||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||| ||     
T  24808719 tccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctat 24808818  T
Q  214 tattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||||| ||| ||||  || ||||||||||||||    
T  24808819 tattcttgtcaagagagagaattttaggatcacatca 24808855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 31974034 - 31974207
Alignment:
Q  78 caacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaa 177  Q
    ||||||||||||||||||||||||||||  | |||| |||  |||||    || |||||||| | | || ||||||||||||||||| | |||||||| |    
T  31974034 caacgagttaaagatcacctcaaacggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaaccca 31974133  T
Q  178 atat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    | || |||| | |||||||||||||||||||||||| ||||||| | ||| ||||  || ||||||||||||||    
T  31974134 aaattaattaggttcttttattccataatgactttattattcttttcaagagagagaattttaggatcacatca 31974207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 29951430 - 29950959
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  29951430 taaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 29951331  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||||||| |    
T  29951330 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 29951231  T
Q  215 attcttgtaaagggagaacatctt-aggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaa 313  Q
    |||||||| ||| ||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29951230 attcttgtcaagagagataatttttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaa 29951131  T
Q  314 acaattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtgga 413  Q
    | || | ||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||             ||| | |||||||||  ||||    
T  29951130 ataaatctatggaatccatcacatgtaactttaactttagagagctcttcacttttattggaagaattagttttcttttcatccacttttgatttatgga 29951031  T
Q  414 cataatcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    ||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  29951030 catgatcatcgttccaaatctcataattttcttccacttgttgagaaaaagtttcttcattctctttgtttc 29950959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 244917 - 245153
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  244917 taaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 245016  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  245017 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 245116  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcat 251  Q
    |||||||| ||| ||||  || |||||||||||||||    
T  245117 attcttgtcaagagagataattttaggatcacatcat 245153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 29949792 - 29949576
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  29949792 taaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 29949693  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  29949692 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 29949593  T
Q  215 attcttgtaaagggaga 231  Q
    |||||||| ||| ||||    
T  29949592 attcttgtcaagagaga 29949576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 21352698 - 21352801
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcac 246  Q
    ||||||||||||||||| | |||||||| || || |||| | |||||||||||||||||||||||| ||||||| | ||| ||||  || ||||||||||    
T  21352698 atgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattcttttcaagagagagaattttaggatcac 21352797  T
Q  247 atca 250  Q
    ||||    
T  21352798 atca 21352801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 38936806 - 38936687
Alignment:
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatata-atttgattcttttattccataatgactttaatattcttgtaaagggag 230  Q
    |||||||||| | || ||||||||||||||||| | |||||||| || ||  ||||| |||||||||| || |||||||||| ||||||||| ||| |||    
T  38936806 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgactttattattcttgtcaagagag 38936707  T
Q  231 aacatcttaggatcacatca 250  Q
    |  || ||||||||||||||    
T  38936706 agaattttaggatcacatca 38936687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 16780699 - 16780582
Alignment:
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggaga 231  Q
    |||||||| | |||| |||| |||||||||||| |  ||||||||||  |||||  ||||||||||| || |||||||||| |||| || | ||| ||||    
T  16780699 acaagacaaacacatcatgaactacgaaaataaaacattgaaccaaaattaattcaattcttttatt-cacaatgactttattatttttatcaagagaga 16780601  T
Q  232 acatcttaggatcacatca 250  Q
      || ||||||||||||||    
T  16780600 gaattttaggatcacatca 16780582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 21352670 - 21352606
Alignment:
Q  157 gaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattctt 220  Q
    |||||||| | |||||| |||||  ||||| | |||||||||||||||||||||||| |||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattctt 21352606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 15018119 - 15018589
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  15018119 taaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 15018218  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||||||| |    
T  15018219 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 15018318  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaa 314  Q
    |||||||| ||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15018319 attcttgtcaagagagataattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaa 15018418  T
Q  315 caattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggac 414  Q
     || | ||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||             ||| | |||||||||  |||||    
T  15018419 taaatctatggaatccatcacatgtaactttaactttagagagctcttcacttttattggaagaattagttttcttttcatccacttttgatttatggac 15018518  T
Q  415 ataatcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    || ||| ||||||| |||| |||||||||||||||| |||||||||||| ||||||||||  |||||||||    
T  15018519 atgatcatcgttccaaatcacataattttcttccacctgttgagaaaaagtttcttcattctctttgtttc 15018589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 11098702 - 11098469
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||||||    
T  11098702 atatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctc 11098604  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaata--taatttgattcttttattccataatgactttaata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||| |||| ||    
T  11098603 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattccataatgaatttatta 11098504  T
Q  216 ttcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||||||||||||||||||||||||||||||    
T  11098503 ttcttgtaaagggagaacatcttaggatcacatca 11098469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 42872936 - 42873142
Alignment:
Q  44 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagat 142  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| |||  || |||||||||||||||||||||||||||||| ||    
T  42872936 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcgggattccagagctctagatatgatgaatacaagacatat 42873034  T
Q  143 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttagga 242  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  42873035 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttagga 42873134  T
Q  243 tcacatca 250  Q
    ||||||||    
T  42873135 tcacatca 42873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 18281296 - 18281457
Alignment:
Q  87 aaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataattt 186  Q
    ||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  18281296 aaagatcacctaaatcggagttgtagagctctagatatgatgaatgcaagacagatacataatgacctacgaaaataactatttgaaccaaaaataattt 18281395  T
Q  187 gattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacat 248  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  18281396 gattcttttattcgataatgactttattattcttgtaaagggagaacatcttaggatcacat 18281457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 15019759 - 15019995
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  15019759 taaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 15019858  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  15019859 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 15019958  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcat 251  Q
    |||||||| ||| ||||  || |||||||||||||||    
T  15019959 attcttgtcaagagagataattttaggatcacatcat 15019995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 9399098 - 9399333
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  9399098 taaatattccgaatttgctcttgagtcaaacagacgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 9399197  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || | ||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  9399198 tccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 9399297  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  9399298 attcttgtcaagagagataattttaggatcacatca 9399333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 13518439 - 13518674
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||    
T  13518439 taaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagc 13518538  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  13518539 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 13518638  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  13518639 attcttgtcaagagagagaattttaggatcacatca 13518674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 21377334 - 21377171
Alignment:
Q  87 aaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataattt 186  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  21377334 aaagatcacctcaatcagagttgcaaagctctagatatgatgaatataagacagatacataatgacctacgaaaataaaaatctgaaccaaaaataattt 21377235  T
Q  187 gattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    | ||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||| |||||    
T  21377234 ggttcttttattccatattgactttattattcttgtcaagggagaatatcttaggatcgcatca 21377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 22473855 - 22473649
Alignment:
Q  44 aacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatc-acctcaaacggagttgcagagctctagatatgatgaatacaagacagat 142  Q
    |||| |||||||||||| ||||| |||   |||||||||  | ||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||| ||    
T  22473855 aacatatgaaatgtagataattttgtaccatttccaacgcttcaaagatccacctcaatcagagttgcagagctctaaatatgatgaatacaacacatat 22473756  T
Q  143 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttagga 242  Q
    ||||||||||| |||||||||||||||||||||||| | || ||| |||||||||||||||||||||||| ||||| ||| |||| | ||||||||||||    
T  22473755 acataatgaccaacgaaaataacaatttgaaccaaa-aaaaattggttcttttattccataatgactttattattcatgtcaaggaataacatcttagga 22473657  T
Q  243 tcacatca 250  Q
    || |||||    
T  22473656 tcgcatca 22473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 39488629 - 39488864
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||| || ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |  |||||    
T  39488629 taaatattctgagtttgctcttgagtcaaacagatgaattgtggagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatctagagc 39488728  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || | |||||||| | || ||||||||||||||||| | |||||| |||||  ||||| | ||||||||||||||||||| |||| |    
T  39488729 tccagatatagccaaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgaatttatt 39488828  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| ||||  || ||||||||||||||    
T  39488829 attcttttcaagagagagaattttaggatcacatca 39488864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 13517922 - 13518137
Alignment:
Q  35 cttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaataca 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |    ||||| ||| ||    || |||    
T  13517922 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaaca 13518021  T
Q  135 agacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaac 233  Q
    ||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |||| |||| ||| ||||      
T  13518022 agacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattattattgtcaagagagaga 13518121  T
Q  234 atcttaggatcacatc 249  Q
    || |||||||||||||    
T  13518122 attttaggatcacatc 13518137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 19459277 - 19459185
Alignment:
Q  246 catcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaacaattatattgaatccatcacatg 338  Q
    |||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||  | || ||||||| || | ||| |||| |||||||||    
T  19459277 catcatactcccccacttcaagaaaattcgacctcgaatttatatcttgaataccttcgggatcaaaaataaatctatagaatgcatcacatg 19459185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 485
Target Start/End: Complemental strand, 19457584 - 19457336
Alignment:
Q  237 ttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaacaattatattgaatccatcaca 336  Q
    ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| |||| |  | |||||||| || | ||| |||| |||||||    
T  19457584 ttaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctggtgtcaaaaataaatctatagaattcatcaca 19457485  T
Q  337 tgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggacataatcttcgttccgaatctca 436  Q
    || || ||  | |||| | | | ||||| ||| ||||||||||             | | ||||| ||||| |||||||| ||| || |||| || | ||    
T  19457484 tggaatttccactttagaaaactcttcattttgattggaagaatttgttggattttcctccccttgtgatttgtggacattatcatctttccaaaacaca 19457385  T
Q  437 taattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    |||||||||||||||||||||||||   ||||||||||  |||||||||    
T  19457384 taattttcttccacttgttgagaaattttttcttcattctctttgtttc 19457336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 24663997 - 24664135
Alignment:
Q  115 ctctagatatgatgaatacaagacagatacataatgaccta--cgaaaataacaa-tttgaaccaaatataatttgattcttttattccataatgacttt 211  Q
    |||||||||||   || |||||||||||| ||||||| |||  |||| |||| || ||||||||||| |||||||| |||| |||| ||||||| ||||     
T  24663997 ctctagatatggacaaaacaagacagatatataatgatctatacgaatataaaaactttgaaccaaaaataatttggttctcttatgccataataactta 24664096  T
Q  212 aatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    |  ||| || | ||||||||  || ||||||||||||||    
T  24664097 atgattattttcaagggagaggatattaggatcacatca 24664135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 40998698 - 40999168
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  40998698 taaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 40998797  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || | |||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||||||| |    
T  40998798 tccagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttatt 40998897  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaa 314  Q
    |||||||| ||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40998898 attcttgtcaagagagagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaa 40998997  T
Q  315 caattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggac 414  Q
    ||| | ||| ||||||||||||||||| ||||| |||| || || ||||||||||||||||||||             ||| | |||||||||  |||||    
T  40998998 caaatctatggaatccatcacatgtaagtttaactttagagggctcttcacttttattggaagaatttgttttctcttcatccacttttgatttatggac 40999097  T
Q  415 ataatcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    || ||| ||||||  ||| ||||||||| ||||||| |||||||||||| ||||||| ||  |||||||||    
T  40999098 atgatcatcgttctaaatttcataatttccttccacctgttgagaaaaagtttcttcgttctctttgtttc 40999168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 9647414 - 9647649
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||    
T  9647414 taaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagc 9647513  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  9647514 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 9647613  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  9647614 attcttgtcaagagagagaattttaggatcacatca 9647649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 23446867 - 23446632
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  23446867 taaatattccgaatttgctcttgactcaaacagatgaaatgtagagaatttggtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 23446768  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  23446767 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 23446668  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| ||||  || ||||||||||||||    
T  23446667 attcttttcaagagagagaatattaggatcacatca 23446632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 7842881 - 7842649
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||| ||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  7842881 taaatattccgaatttgcacttgagtcaaacggatgaattgtatagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 7842782  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    ||||||||| |  || |||| ||||| | ||  |||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  7842781 tctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 7842682  T
Q  215 attcttgtaaagggagaacatcttaggatcaca 247  Q
    |||||||| ||| ||||  || |||||||||||    
T  7842681 attcttgtcaagagagagaattttaggatcaca 7842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 41000557 - 41000794
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  | ||||||    
T  41000557 taaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaatttcgcaagctttccaacgagttagagatcacctcaaacggacatccagagc 41000656  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacg-aaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaa 213  Q
    || ||||||    || ||||||| || | || |||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| ||||||||||     
T  41000657 tccagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttat 41000756  T
Q  214 tattcttgtaaagggagaacatcttaggatcacatcat 251  Q
    ||||||||| ||| ||||  || |||||||||||||||    
T  41000757 tattcttgtcaagagagagaattttaggatcacatcat 41000794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 9595915 - 9596149
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||    
T  9595915 taaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcgggagc 9596014  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||| ||    || |||||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |    
T  9596015 tccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttatt 9596114  T
Q  215 attcttgtaaagggagaacatcttaggatcacatc 249  Q
    ||| |||| ||| ||||  || |||||||||||||    
T  9596115 attattgtcaagagagagaattttaggatcacatc 9596149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 9646878 - 9647112
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |    |||    
T  9646878 taaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagc 9646977  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||| ||    || |||||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |    
T  9646978 tccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttatt 9647077  T
Q  215 attcttgtaaagggagaacatcttaggatcacatc 249  Q
    ||| |||| ||| ||||  || |||||||||||||    
T  9647078 attattgtcaagagagagaattttaggatcacatc 9647112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 24790170 - 24790090
Alignment:
Q  171 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatcata 252  Q
    ||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||||    
T  24790170 gaaccaaat-taatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatcata 24790090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 24790151 - 24790229
Alignment:
Q  171 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  24790151 gaaccaaat-taatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatca 24790229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 485
Target Start/End: Original strand, 20189276 - 20189746
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||  | |||| |    
T  20189276 taaatattccgactttgctcttgagtcaaacagatgaaatgtagagaattttgtaaactttccaacaagttgaagatcacctcaaacggacatccagaac 20189375  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  20189376 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaattaatttggttcttttattccacaatgactttatt 20189475  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaataccacctgggtcaaaaa 314  Q
    ||| || | ||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  20189476 atttttttcaagagagagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcatgggtcaaaaa 20189575  T
Q  315 caattatattgaatccatcacatgtaactttaaatttaaagagcacttcacttttattggaagaannnnnnnnnnnnncattcccttttgattcgtggac 414  Q
    ||| | ||| |||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||             ||| | |||||||    |||||    
T  20189576 caaatctatagaattcatcacatgtaactttaactttagagagctcttcacttttattggaagaaattgttttcttttcatccacttttgaagtatggac 20189675  T
Q  415 ataatcttcgttccgaatctcataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 485  Q
    || ||| ||||||| ||||||||||||| ||||||| |||||||||||| ||| ||||||  |||||||||    
T  20189676 atgatcatcgttccaaatctcataatttccttccacctgttgagaaaaagtttattcattctctttgtttc 20189746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 40554074 - 40553873
Alignment:
Q  49 atgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacata 147  Q
    |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  40554074 atgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctctagatatgatgaatacaagacagatacata 40553976  T
Q  148 atgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcaca 247  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  40553975 atgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcaca 40553876  T
Q  248 tca 250  Q
    |||    
T  40553875 tca 40553873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 40554628 - 40554769
Alignment:
Q  110 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  40554628 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 40554727  T
Q  210 ttaatattcttgtaaagggagaacatcttaggatcacatcat 251  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  40554728 ttattattcttgtaaagggagaacatcttaggatcacatcat 40554769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 36233513 - 36233278
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||    
T  36233513 taaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagc 36233414  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  36233413 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttatt 36233314  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  36233313 attcttgtcaagagagataattttaggatcacatca 36233278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 31390245 - 31390119
Alignment:
Q  124 tgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgta 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  31390245 tgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgta 31390146  T
Q  224 aagggagaacatcttaggatcacatca 250  Q
    |||||||||||||||||||||||||||    
T  31390145 aagggagaacatcttaggatcacatca 31390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24157532 - 24157763
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  24157532 taaatattccgaattttctcttgagttaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 24157631  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||| | |||||||||||||||||||||||| |    
T  24157632 tccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttatt 24157731  T
Q  215 attcttgtaaagggagaacatcttaggatcac 246  Q
    |||||| | ||| ||||  || ||||||||||    
T  24157732 attcttttcaagagagagaattttaggatcac 24157763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 36233845 - 36234070
Alignment:
Q  26 gaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatg 125  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||| ||||||     
T  36233845 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatata 36233944  T
Q  126 atgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaa 224  Q
       || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| |    
T  36233945 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtca 36234044  T
Q  225 agggagaacatcttaggatcacatca 250  Q
    || ||||  || ||||||||||||||    
T  36234045 agagagataattttaggatcacatca 36234070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 20190909 - 20191144
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||  | || |||    
T  20190909 taaatattccgaatttgctcttgagtcaaacagatgaaatgtagataatttagtaagctttccaaagagttaaagatcacctcaaacggacatccaaagc 20191008  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||  | || |||||||||| | || ||||| ||||||||||| | |||||| |||||  ||||| | ||||||||||| |||||||||||| |    
T  20191009 tccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaattaattaggttcttttattctataatgactttatt 20191108  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| ||||  || ||||| ||||||||    
T  20191109 attcttttcaagagagataattttaggttcacatca 20191144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 48463010 - 48462776
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||    
T  48463010 taaatattccgaatttgctcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacatcaaacggatatccagagc 48462911  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || | ||||    || |||||||| | | || ||||||||| ||||||| | |||||| | |||  ||||||||||||||| || |  |||||||||| |    
T  48462910 tccaaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaattaatttgattctttt-tttcgcaatgactttatt 48462812  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| || |  || ||||||||||||||    
T  48462811 attcttctcaagagacagaattttaggatcacatca 48462776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 48463836 - 48464035
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||| ||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  48463836 taaaaattccgaatttgct--tgagtcaaacagatgaaatgtaaagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 48463933  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||| ||||||| |||||||| |||||  || |||| ||||||||||||| ||| |||||| |    
T  48463934 tccagatatagccaaaacaagacagacatatcatgacctacaaaaataa-aatttgaacccaaaattattttggttcttttattccacaataactttatt 48464032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 31390560 - 31390614
Alignment:
Q  196 attccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  31390560 attccataatgaatttattattcttgtaaagggagaacatcttaggatcacatca 31390614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 20759175 - 20759076
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcaca 247  Q
    ||||||||||||||||| | |||||||||||  ||||||| |||||||    || |||||||||| ||||||||| ||||||||  || |||||||||||    
T  20759175 atgacctacgaaaataaaactttgaaccaaaattaatttggttcttttt---cacaatgactttattattcttgtcaagggagagaattttaggatcaca 20759079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 11281 - 11512
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||||||||||||    
T  11281 atatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttgcagagctc 11379  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  11380 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattcca-aatgactttaatatt 11478  T
Q  218 cttgtaaagggagaacatcttaggatcacatcat 251  Q
    ||||||||||||||||||||||||||||||||||    
T  11479 cttgtaaagggagaacatcttaggatcacatcat 11512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 17857364 - 17857133
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||||||    
T  17857364 atatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctc 17857266  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  17857265 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattatt 17857166  T
Q  218 cttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||||||||||||||||||||||||||||    
T  17857165 cttgtaaagggagaacatcttaggatcacatca 17857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 23016577 - 23016809
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | ||| ||||||||||  ||||||||||| |||    
T  23016577 atatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaatatcacctcaattggagttgcagaactc 23016675  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  23016676 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgatttttttattccataacgactttaatatt 23016775  T
Q  218 cttgtaaagggagaacatcttaggatcacatcat 251  Q
    ||||||||||||||||||||||||||||||||||    
T  23016776 cttgtaaagggagaacatcttaggatcacatcat 23016809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 23016334 - 23016474
Alignment:
Q  110 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 209  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23016334 cagagctctagatatgatgaatacaagacaaatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgact 23016433  T
Q  210 ttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23016434 ttaatattcttgtaaagggagaacatcttaggatcacatca 23016474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 8366312 - 8366076
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||  | ||||||    
T  8366312 taaatattccgaatttgctcttgagtcaaatagataaaatgtagagaattccgtaagctttcaaacgagttaaagatcacctcaaacggacatccagagc 8366213  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || | ||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||||| |||| |    
T  8366212 tccaaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttatt 8366113  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcat 251  Q
    |||||||| ||| ||||  || |||||||||||||||    
T  8366112 attcttgtcaagagagagaattttaggatcacatcat 8366076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 17278154 - 17278385
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  |  |||||    
T  17278154 taaatattccgaatttgcttttgagtcaaacagacgaaatgtagaaaatttcgtaagctttccaatgagttaaagatcacctcaaacggacatctagagc 17278253  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaata 215  Q
    || ||||||    || |||||||||| | || ||||| |||||||||||   || || |||||  ||||||| ||||||||||||| |||||||||| ||    
T  17278254 tccagatatagccaaaacaagacagacatatcatgacttacgaaaataaactttggacccaaaattaatttggttcttttattccacaatgactttatta 17278353  T
Q  216 ttcttgtaaagggagaacatcttaggatcaca 247  Q
    ||||||| ||| ||||  || |||||||||||    
T  17278354 ttcttgtcaagagagagaattttaggatcaca 17278385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 17277598 - 17277384
Alignment:
Q  32 gctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaat 131  Q
    |||| ||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  | |||||||| ||||||    ||     
T  17277598 gctcctgagtcaaacagacgaaatgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaa 17277499  T
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggag 230  Q
    |||||||| | | || ||||||||| ||||||| | |||||| |||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| |||    
T  17277498 acaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattccacaatgactttattattcttgtcaagagag 17277399  T
Q  231 aacatcttaggatca 245  Q
    |  || |||||||||    
T  17277398 agaattttaggatca 17277384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 181 - 312
Target Start/End: Complemental strand, 17277716 - 17277585
Alignment:
Q  181 taatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatcatactctccctcttcaagagaattcgacctc 280  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||| ||||  |  ||||||||||||||||||||||||| |||||||||||||||||     
T  17277716 taatttggttcttttattccataatgactttattattcttgtcaagagagagaaatttaggatcacatcatactctccctcctcaagagaattcgacctt 17277617  T
Q  281 gaatttatagcttgaataccacctgggtcaaa 312  Q
    |||||||||||||||||| | |||| ||||||    
T  17277616 gaatttatagcttgaatagctcctgagtcaaa 17277585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 6778289 - 6778369
Alignment:
Q  171 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatcat 251  Q
    ||||||||  ||||| | ||||||||||||| ||| |||||| ||||||||||||||||||  || |||||||||||||||    
T  6778289 gaaccaaaattaattcggttcttttattccacaataactttattattcttgtaaagggagagaattttaggatcacatcat 6778369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 4421 - 4195
Alignment:
Q  24 ccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagat 122  Q
    |||| ||||||  ||| ||||||| |||||||||||| |||||| |||  ||||| ||||  |||||||||||||||| |||||||| ||||||||| ||    
T  4421 ccgattttgcttctgagtcaaacatatgaaatgtagatgaattt-gtaccctttcgaacgctttaaagatcacctcaatcggagttgtagagctctaaat 4323  T
Q  123 atgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgt 222  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  4322 atgatgaatacaatacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgactttattattcttgt 4223  T
Q  223 aaagggagaacatcttaggatcacatca 250  Q
    ||||||||||||||||||||||||||||    
T  4222 aaagggagaacatcttaggatcacatca 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 5421 - 5190
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  ||| || |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||| ||    
T  5421 atatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagttc 5323  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  5322 tagatatgatgaatacaagacacatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattatt 5223  T
Q  218 cttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||||||||||||||||||||||||||||    
T  5222 cttgtaaagggagaacatcttaggatcacatca 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 375245 - 375422
Alignment:
Q  73 ctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttga 172  Q
    ||||||||||  | |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  375245 ctttccaacgcttcaaagatcacctcaatcagagttccagagctctagatatgaggaatacaagacagatacataatgacctacaaaaataacaatttga 375344  T
Q  173 accaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  375345 accaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcacatca 375422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 23460407 - 23460172
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  23460407 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggatatccagagc 23460308  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | |||||||||||||||||||| | |||||| |||||  ||||||| ||||||||||| | |||||||||| |    
T  23460307 tccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattctacaatgactttatt 23460208  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  23460207 attcttgtcaagagagagaattttaggatcacatca 23460172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 5554270 - 5554505
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||    
T  5554270 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctatccaacgagttaaagatcacctcaaacggacatccagagc 5554369  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  5554370 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttatt 5554469  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  5554470 attcttgtcaagagagagaattttaggatcacatca 5554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 5553403 - 5553168
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  5553403 taaatatttcgaatttgctcttgaattaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 5553304  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||| ||| | || ||||||||||||||||| | |||||| |||||  ||||||| |||||||||| || |||||||||| |    
T  5553303 tccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttatttcacaatgactttatt 5553204  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  5553203 attcttgtcaagagagagaattttaggatcacatca 5553168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 16346839 - 16346604
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  16346839 taaatattctgaatttgctcttgactcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 16346740  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  16346739 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttatt 16346640  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| |  || ||||  || ||||||||||||||    
T  16346639 attcttttccagagagagaatattaggatcacatca 16346604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 47418455 - 47418690
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  47418455 taaatattctgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 47418554  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||    || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |    
T  47418555 tccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttatt 47418654  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||| | ||| ||||  || ||||||||||||||    
T  47418655 attcttttcaagagagagaatattaggatcacatca 47418690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 25531841 - 25531606
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||  | ||||||    
T  25531841 taaatattctgaatttgctcttaagtcaaacagatgaaatgtagagaattccataagctttccaacgagttaaagatcacctcaaacggacatccagagc 25531742  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||| ||| | ||||| |||| |    
T  25531741 tccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttttttctacaatgaatttatt 25531642  T
Q  215 attcttgtaaagggagaacatcttaggatcacatca 250  Q
    |||||||| ||| ||||  || ||||||||||||||    
T  25531641 attcttgtcaagagagagaattttaggatcacatca 25531606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 16022631 - 16022838
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||  | ||||||    
T  16022631 taaatattccgaatttgatcttgagtcaaacagacgaaatgtagagaacttcgtaagctttccaacgagttaaagaccacctcaaacggacatccagagc 16022730  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaattt-gaaccaaatataatttgattcttttattccataatgactttaat 214  Q
    |  ||||||    || |||||||||| | || ||||||||||||||||| | ||| || |||||  ||||||| ||||||||||||| |||||||||| |    
T  16022731 ttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattccacaatgactttatt 16022830  T
Q  215 attcttgt 222  Q
    ||||||||    
T  16022831 attcttgt 16022838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 47566680 - 47566446
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||  ||||||||||  || ||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||| || |  | || |||    
T  47566680 taaatattttgaatttgctc--gagtcaaacagacgaaatgtaaagaattttgtaagctttccaacgaattaaagatcacctcaatcgaacatccatagc 47566583  T
Q  116 tctagatatgatgaatacaagac--agatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaa 213  Q
    || ||||||    || |||||||  | ||| || |||| |||||||||||| | ||| || ||||  ||| |  |||||||||||||| ||||||||||     
T  47566582 tccagatatagccaagacaagacaaacatatatcatgatctacgaaaataaaattttaaatcaaaattaaatcaattcttttattccacaatgactttat 47566483  T
Q  214 tattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||||| |||  |||  || ||||||||||||||    
T  47566482 tattcttgtcaagaaagagaattttaggatcacatca 47566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 32570674 - 32570600
Alignment:
Q  26 gaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 100  Q
    ||||||||||| || ||||||| |  ||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  32570674 gaatttgctctcgagtcaaacatacaaaatgtagataattttgtaagctttccaacgaattaaagatcacctcaa 32570600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 2683557 - 2683454
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcaca 247  Q
    |||| |||| ||||||||| ||||||| |||  |||||||||| |||||||||| ||||| |||| |||||||||   ||||||  | |||| |||||||    
T  2683557 atgatctacaaaaataacactttgaacaaaaattaatttgatttttttattccaaaatgattttattattcttgtcgtgggagagtaccttacgatcaca 2683458  T
Q  248 tcat 251  Q
    ||||    
T  2683457 tcat 2683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 16020185 - 16020225
Alignment:
Q  246 catcatactctccctcttcaagagaattcgacctcgaattt 286  Q
    ||||||||||||||||||| | |||||||| ||||||||||    
T  16020185 catcatactctccctcttcgaaagaattcgtcctcgaattt 16020225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 13381 - 13610
Alignment:
Q  19 atattccgaatttgctcttgaatcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 117  Q
    |||| |||| ||||||  |||| | |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| |||||||| |||||||    
T  13381 atatgccgattttgcttctgaacccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttgtagagctc 13479  T
Q  118 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||| ||||    
T  13480 tagatatgatgaatacaaaacagatacataatgacctacgaaaataaaaatttgaacccaaaataatttggttcttttattccataatgactttattatt 13579  T
Q  218 cttgtaaagggagaacatcttaggatcacat 248  Q
    ||||| ||||||||| |||||||||||||||    
T  13580 cttgtcaagggagaatatcttaggatcacat 13610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 55062 - 54826
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||    
T  55062 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 54963  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgac-tttaa 213  Q
    || ||||||   ||| |||||||||| | |  ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||| ||||     
T  54962 tccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttat 54863  T
Q  214 tattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||||| ||| ||||  |  ||||||||||||||    
T  54862 tattcttgtcaagagagagaactttaggatcacatca 54826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 563 - 799
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  | | ||||    
T  563 taaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatccggagc 662  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactt-taa 213  Q
    || ||||||    || |||||||||| | || ||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||| ||     
T  663 tccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctat 762  T
Q  214 tattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||||| ||| ||||  || ||||||||||||||    
T  763 tattcttgtcaagagagagaattttaggatcacatca 799  T

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Target: scaffold0013 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 241251 - 241018
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  241251 taaatattccgaatttgctcctgagtcaaaaagacgaaatgtagagaacttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagc 241152  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    |  ||||||    || |||||||||| | || ||||||||||||||||| | ||| || |||||  ||||||| |||||||||||   |||||||||| |    
T  241151 ttcagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattctgcaatgactttatt 241052  T
Q  215 attcttgtaaagggagaacatcttaggatcacat 248  Q
    |||||||| ||| ||||  || ||||||||||||    
T  241051 attcttgttaagagagagaattttaggatcacat 241018  T

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Target: scaffold0146 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 31762 - 31561
Alignment:
Q  50 tgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgatgaatacaagacagatacataat 149  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||    || |||||||||| | || ||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  150 gacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacat 248  Q
    ||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||| | ||| ||||  || ||||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttttcaagagagagaatattaggatcacat 31563  T
Q  249 ca 250  Q
    ||    
T  31562 ca 31561  T

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Target: scaffold0026 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 86784 - 86552
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagc 115  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |   ||||    
T  86784 taaatattccgaatttgctcttgagtcaaacagatgaaatttagagaatttcgtaagctttcaaacgagttaaagatcacctcaaacggacatcaggagc 86685  T
Q  116 tctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaat 214  Q
    || | ||||    || |||||  ||||  || ||||||||| ||||||| |  ||||| |||||  ||||||| ||| ||||||||| |||||||||| |    
T  86684 tccatatatagccaaaacaag--agat--atcatgacctacaaaaataaaacattgaacccaaaattaatttggttcctttattccacaatgactttatt 86589  T
Q  215 attcttgtaaagggagaacatcttaggatcacatcat 251  Q
    |||||||| ||  ||||  || |||||||||||||||    
T  86588 attcttgtcaaaagagagaattttaggatcacatcat 86552  T

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Target: scaffold0026; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 673 - 776
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcac 246  Q
    ||||||||||||||||| | |||||||| || || ||||||||||||||||| |  |||||||||| ||||||||| ||| ||||  || ||||||||||    
T  673 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttattattcttgtcaagagagagaattttaggatcac 772  T
Q  247 atca 250  Q
    ||||    
T  773 atca 776  T

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Target: scaffold0269 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 1882 - 1954
Alignment:
Q  16 taaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaa 88  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  1882 taaatattccgaatttgctcttgagtcagacagatgaaatgtagagaattccataagctttccaacgagttaa 1954  T

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Target: scaffold0269; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 1964 - 2083
Alignment:
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggag 230  Q
    ||||||||||||  | ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||| ||| |||||||||  || |||    
T  1964 acaagacagata--tcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattcttgtcgagagag 2061  T
Q  231 aacatcttaggatcacatcata 252  Q
    |  || ||||||||||||||||    
T  2062 agaattttaggatcacatcata 2083  T

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Target: scaffold0096 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 22488 - 22371
Alignment:
Q  132 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggag 230  Q
    |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||||||| ||||||||| ||| |||    
T  22488 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagag 22389  T
Q  231 aacatcttaggatcacat 248  Q
    |  || ||||||||||||    
T  22388 ataattttaggatcacat 22371  T

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Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 17730 - 17626
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcac 246  Q
    ||||||||||||||||| | |||||||| || || |||||| ||||||||||| | | |||||||| ||||||||| ||| ||||  || ||||||||||    
T  17730 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattcttgtcaagagagagaattttaggatcac 17631  T
Q  247 atcat 251  Q
    |||||    
T  17630 atcat 17626  T

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Target: scaffold0021; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 27261 - 27157
Alignment:
Q  148 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcac 246  Q
    ||||||||||||||||| | |||||||| || || |||||| ||||||||||| | | |||||||| ||||||||| ||| ||||  || ||||||||||    
T  27261 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattcttgtcaagagagagaattttaggatcac 27162  T
Q  247 atcat 251  Q
    |||||    
T  27161 atcat 27157  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 12037064 - 12037133
Alignment:
Q  181 taatttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  12037064 taatttggttcttttattccacaatgactttattattcttgtcaagagagagaattttaggatcacatca 12037133  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 12037053 - 12036986
Alignment:
Q  183 atttgattcttttattccataatgactttaatattcttgtaaagggagaacatcttaggatcacatca 250  Q
    ||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  12037053 atttggttcttttattccacaatgactttattattcttgttaagagagagaattttaggatcacatca 12036986  T

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