View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7716_high_7 (Length: 274)

Name: NF7716_high_7
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7716_high_7
NF7716_high_7
[»] chr6 (7 HSPs)
chr6 (1-233)||(30983981-30984213)
chr6 (1-233)||(30990145-30990377)
chr6 (1-212)||(31009866-31010077)
chr6 (1-160)||(30942085-30942244)
chr6 (228-258)||(30984226-30984256)
chr6 (228-258)||(30990390-30990420)
chr6 (228-258)||(31010111-31010141)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30983981 - 30984213
Alignment:
Q  1 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcttacggtgattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  30983981 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcatacggtgattgc 30984080  T
Q  101 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaagaacccgatcgtctaaatccgtgataccaccacctctagcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  30984081 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaagaacccgatcatttaaatccgtgataccaccacctctagcag 30984180  T
Q  201 caccatctaatggacaaacaccatatgatggac 233  Q
    ||||||| |||||||||| ||||||||||||||    
T  30984181 caccatcaaatggacaaataccatatgatggac 30984213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30990145 - 30990377
Alignment:
Q  1 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcttacggtgattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  30990145 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcatacggtgattgc 30990244  T
Q  101 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaagaacccgatcgtctaaatccgtgataccaccacctctagcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  30990245 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaagaacccgatcatttaaatccgtgataccaccacctctagcag 30990344  T
Q  201 caccatctaatggacaaacaccatatgatggac 233  Q
    ||||||| |||||||||| ||||||||||||||    
T  30990345 caccatcaaatggacaaataccatatgatggac 30990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31009866 - 31010077
Alignment:
Q  1 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcttacggtgattgt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||     
T  31009866 atgtgatggttgcatgaaatccggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcttctggttattgc 31009965  T
Q  101 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaagaacccgatcgtctaaatccgtgataccaccacctctagcag 200  Q
    ||||||||| |||| |||| ||||||||||  ||||||  |||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||    
T  31009966 ggattttgcagccccaattcaacaactatacctttgcctaatgagcccgattgtaaaagaacccgatcgtttaaatccgtgataccaccacctctagaag 31010065  T
Q  201 caccatctaatg 212  Q
    ||||||| ||||    
T  31010066 caccatcaaatg 31010077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 30942085 - 30942244
Alignment:
Q  1 atgtgatggttgcatgaaatctggagggagatgtggatataatacaactgagaatgtggttttgtgtctatgtcctaatcaacaatcttacggtgattgt 100  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| || |||||||||  ||||||||| | |||||||||||| | ||||| ||||||||     
T  30942085 atgtgatggttgcataaaatctggtgggagatgtggatacaatgcatctgagaatgcagttttgtgtatgtgtcctaatcaagagtcttatggtgattgc 30942184  T
Q  101 ggattttgccgcccaaatttaacaactatagttttgccggatgatcccggttgcaaaaga 160  Q
    || ||||||||||  || | |||||||    ||||||||||||| || | ||||||||||    
T  30942185 gggttttgccgcctgaagtcaacaactgagattttgccggatgagcctgattgcaaaaga 30942244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 30984226 - 30984256
Alignment:
Q  228 atggactaacaccggcagggggtccaaattc 258  Q
    |||||||||||||||||||||||||||||||    
T  30984226 atggactaacaccggcagggggtccaaattc 30984256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 30990390 - 30990420
Alignment:
Q  228 atggactaacaccggcagggggtccaaattc 258  Q
    |||||||||||||||||||||||||||||||    
T  30990390 atggactaacaccggcagggggtccaaattc 30990420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 31010111 - 31010141
Alignment:
Q  228 atggactaacaccggcagggggtccaaattc 258  Q
    |||||||||||||||||||||||||||||||    
T  31010111 atggactaacaccggcagggggtccaaattc 31010141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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