View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_13 (Length: 218)
Name: NF7716_low_13
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 39295610 - 39295430
Alignment:
| Q |
21 |
accgcggcaacttgaaaactttgaagaccttgctatcttcatttctttggtttcttccattgtgaatttgatagt-tagtctttgagtttcaatgttata |
119 |
Q |
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| T |
39295610 |
accgcggcaacttgaaaactttgaagaccttgctatcttcatttctttggtttcttccattgtgaatttgatagtatagtctttgagtttcaatgttata |
39295511 |
T |
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| Q |
120 |
attaatgatttgtaggttatttcgtattacaatgatgctgatatgtagtagaaatccatgatgcccatatatatagcagat |
200 |
Q |
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| T |
39295510 |
attaatgatttgtaggttatttcgtattacaatgatgcttatatgtagtagaaatccaagatgctcatatatatagcagat |
39295430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 39288704 - 39288579
Alignment:
| Q |
41 |
ttgaagaccttgctatcttcatttctttggtttcttccattgtgaatttgatagt-tagtctttgagtttcaatgttataattaatgatttgtaggttat |
139 |
Q |
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||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||| | | || |
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| T |
39288704 |
ttgaaaaccttgctatcttcatttctttggcttcttccatactgaatttgatagtatagtgtttgagtttcaatgtta----aaatgatttgttgataat |
39288609 |
T |
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| Q |
140 |
ttcgtattacaatgatgctgatatgtagta |
169 |
Q |
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| T |
39288608 |
ttcatattacaatgatgttgatatatagta |
39288579 |
T |
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