View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_2 (Length: 485)
Name: NF7716_low_2
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 24 - 473
Target Start/End: Original strand, 42550968 - 42551422
Alignment:
| Q |
24 |
agaaagaacaccagtggaagctttctttgttttagcactcttttgtgaggacaatgactttatggcagttattactgcttcagaagctctctggagagcc |
123 |
Q |
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| T |
42550968 |
agaaagaacaccagtggaagttttctttgttttagcactcttttgtgaggacaatgactttatggcagttattactgcttcagaagctctctggagagcc |
42551067 |
T |
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| Q |
124 |
cttacgcgtcgtcgagggagtgaagtaccgttgctcttcttgtgttggaatccaacggtggtgcagcattgtcttcgtgggaatgatttgaacccgcttg |
223 |
Q |
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| T |
42551068 |
cttacgcgtcgacgagggagtgaagtaccgttgttcttcttgtgttggaatccaacggtggtgcagcattgtcttcgtgggaatgatttgaacccgcttg |
42551167 |
T |
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| Q |
224 |
atgaacatgagcttaggtcatctcggaggtagtctttgagcaaaagggtaggctttgaggtatatttggttggttttattattagagaattatcacgacg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551168 |
atgaacatgagcttaggtcatctcggaggtagtctttgagcaaaagggtaggctttgaggtatatttggttggttttattattagagaattatcacgacg |
42551267 |
T |
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| Q |
324 |
tgaaggtttgcaaatatttgaagccatgtatagaac----aaagtagctttgctatatgaatatttcaagagaatacactcataagaaaattgatgaact |
419 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551268 |
tgaaggtttgcaaatatttgaagccatgtatagaacaattaaagtagatttgctatatgaatatttcaagagaatacactcataagaaaattgatgaact |
42551367 |
T |
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| Q |
420 |
atggagaaaag-ttgtatggtgcagaagtttagatataagcaacatttatatatt |
473 |
Q |
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| T |
42551368 |
atggagaaaagagtgtatggtgcagaagtttagatataagcaacatttatatatt |
42551422 |
T |
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