View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_3 (Length: 483)
Name: NF7716_low_3
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 12106602 - 12107078
Alignment:
| Q |
1 |
gcatttttcttccttcacaggttcaccaaatgttgacgagtacctccagcagcttactgacacctctagaaaaggaaaaagaggaagacccnnnnnnncc |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12106602 |
gcatttttcttctttcacaggttcaccaaatgttgacgagtacctgctgcagcttactgacacctctagaaaaggaaaaagaggaagacccaaaaaaacc |
12106701 |
T |
|
| Q |
101 |
aagagtcccaaggacatctctggaatcaaagctaaactcaaggccactattgaggttcttga-----actctgacatggtgtgtaccaggtccaaatcgc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12106702 |
aagagtcccaaggacatctctggaatcaaagctaaactcaaggccactattgaggttcttgaggcggactctgacatggtgtgtaccaggtccaaatcgc |
12106801 |
T |
|
| Q |
196 |
ataacaccagtaatacctctcaataaagttcagttatttggaacttcagacctgaacctatggttccttttatagtgtcgggatcacattcagcagatgc |
295 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12106802 |
ataacaccagcaatacctctcaataaagttcagttatttggaacttcagacctgaacctatggttccttttatagtgtcgggatcacattcagcagatgc |
12106901 |
T |
|
| Q |
296 |
tattgctagcttgcaggccatcaagccatgaggcagtacagaagatccacattattttgttttgcctttccttgtttgagatatgctaggctagtttctg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12106902 |
tattgctagcttgcaggccatcaagccatgaggcagtaccgaagatccacattattttgttttgcctttccttgtttaagatatgctaggctagtttctg |
12107001 |
T |
|
| Q |
396 |
ttttgctaggcatttgttgtaagtggcagtagtttacactttacagggattgccatctttacttcgccccttttctt |
472 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
12107002 |
ttttgctagggatttgttgtaagcggcagtagtttacactttacagggattgccatttttacttcacaccttttctt |
12107078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 137 - 472
Target Start/End: Original strand, 8058500 - 8058833
Alignment:
| Q |
137 |
ctcaaggccactattgaggttcttga-----actctgacatggtgtgtaccaggtccaaatcgcataacaccagtaatacctctcaataaagttcagtta |
231 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
8058500 |
ctcaaggccactattgaggttcttgaggcggactctgacatggtgtgtaccaggtccaaatcacataacaccagtaatacctctcaataaagttcaatta |
8058599 |
T |
|
| Q |
232 |
tttggaacttcagacctgaacctatggttccttttatagtgtcgggatcacattcagcagatgctattgctagcttgcaggccatcaagccatgaggcag |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058600 |
tttggaacttcagacctgaacctatggttccttttatagtgtcgggatcacaatcagcagatgctattgctagcttgcaggccatcaagccatgaggcag |
8058699 |
T |
|
| Q |
332 |
tacagaagatccacattattttgttttgcctttccttgtttgagatatgctaggctagtttctgttttgctaggcatttgttgtaagtggcagtagttta |
431 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| |
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| T |
8058700 |
ttcagaagatccacattattttgttttgcctttccttgtttgagatatgctagtctagtttctgttttgctagggatttgttgtatgtggcagtag---- |
8058795 |
T |
|
| Q |
432 |
cactttacagggattgccatctttacttcgccccttttctt |
472 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8058796 |
---tttacatggattgccatctttacttcgccccttttctt |
8058833 |
T |
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