View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_5 (Length: 407)
Name: NF7716_low_5
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 37 - 390
Target Start/End: Original strand, 12916346 - 12916698
Alignment:
| Q |
37 |
cgtgatttccaatttttggatgcattcgagaaggaatgtatccgaacacttctgatgaaagacgtgtc-gatgatctcgccgttttagaagaacaatact |
135 |
Q |
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| T |
12916346 |
cgtgatttccaatttttggatgcattcgagaaggaatgtatccgaacacttctgataaaagacgtgtcaggtgatctcgccgtttcagaagaacaatact |
12916445 |
T |
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| Q |
136 |
ttcaacttgcagaagacattaatcaagtttcatttcatannnnnnnnnnnnnngtgttgaataaaatttgcggttcaatggaccctactaatgtgactta |
235 |
Q |
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| T |
12916446 |
ttcaacttgcagaagacattaatcaagtttcatttcat--ttcatttttttgtgtgttgaataaaatttgcggttcaatggaccctactaatgtgactta |
12916543 |
T |
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| Q |
236 |
ccgtcaccgtcacgattctttccttcggtgacagatgcaagcttctgaagattaagcttcacaacggtatcagcaaaaagacgcgtatcctcttcagtat |
335 |
Q |
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| T |
12916544 |
ccgtcaccgtcacgattctttccttcggtgacagatgcaagcttctgaagattaagcttcacaacggtatcagcaaaaagacgcgtatcctcttcagtat |
12916643 |
T |
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| Q |
336 |
taccttcaggaacatctacgacataagattccaaaacaacggtccagatctcacc |
390 |
Q |
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| T |
12916644 |
taccttcaggaacatctacgacataagattccaaaacaacggtccagatctcacc |
12916698 |
T |
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