View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7716_low_6 (Length: 405)

Name: NF7716_low_6
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7716_low_6
NF7716_low_6
[»] chr5 (3 HSPs)
chr5 (165-405)||(40389207-40389447)
chr5 (18-86)||(7413870-7413938)
chr5 (20-85)||(5075263-5075328)
[»] chr3 (1 HSPs)
chr3 (18-87)||(7400888-7400957)
[»] chr8 (1 HSPs)
chr8 (18-85)||(25641796-25641863)
[»] chr2 (4 HSPs)
chr2 (18-85)||(31331325-31331392)
chr2 (18-85)||(31338046-31338113)
chr2 (18-87)||(30269900-30269969)
chr2 (31-85)||(44924226-44924280)
[»] chr7 (2 HSPs)
chr7 (18-85)||(4682325-4682392)
chr7 (21-60)||(26205119-26205158)
[»] chr4 (2 HSPs)
chr4 (18-85)||(53303293-53303361)
chr4 (18-69)||(8239063-8239114)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 165 - 405
Target Start/End: Complemental strand, 40389447 - 40389207
Alignment:
Q  165 gataagatgacagcagttgaagagacggagtgtcgaacgaccactatattcttcttttgttgaatgaatgaaggttcttgattttgctaaacatatagat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40389447 gataagatgacagcagttgaagagacggagtgtcgaacgaccactatattcttcttttgttgaatgaatgaaggttcttgattttgctaaacatatagat 40389348  T
Q  265 tagacactaacaattgagagaacttcgattttttaagactaactttgataaattagtcaacnnnnnnnnttcacagccataattactgcttatgacgtac 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||        || ||||||||||||||||||||||||||||    
T  40389347 tagacgctaacaattgagagaacttcgattttttaagactaacttagataaattagtcaacaaaaaaaattgacagccataattactgcttatgacgtac 40389248  T
Q  365 attgcataaatgatattgtttctaccattagattataacat 405  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40389247 attgcataaatgatattgtttctaccattagattataacat 40389207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7413870 - 7413938
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtga 86  Q
    ||||||||| |||| ||||| ||| ||||| ||||||||||||||| ||||||| | ||||||||||||    
T  7413870 tctatattaataaccattaagtaagtgttgtaaggtgaatgttactaaaacacataagtgtagtagtga 7413938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5075328 - 5075263
Alignment:
Q  20 tatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    |||||| ||||| ||||| ||| ||||||||||||||||||| | ||||||| | ||||| |||||    
T  5075328 tatattggtaaccattaagtaagtgttgcaaggtgaatgttattaaaacacataagtgtaatagtg 5075263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7400957 - 7400888
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtgaa 87  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  7400957 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtgaa 7400888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 25641796 - 25641863
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  25641796 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 25641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31331392 - 31331325
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  31331392 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 31331325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31338113 - 31338046
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  31338113 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 31338046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30269900 - 30269969
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtgaa 87  Q
    ||||||||||||||||||||| || ||||||||  ||||||||||| ||||||| |||||||||||||||    
T  30269900 tctatattagtaactattaaacaagtgttgcaatatgaatgttactaaaacacatatgtgtagtagtgaa 30269969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 44924226 - 44924280
Alignment:
Q  31 ctattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    |||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  44924226 ctattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 44924280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 4682392 - 4682325
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    ||||||||||||||||||||| || ||||||||| | ||||||||| ||||||| |||||||||||||    
T  4682392 tctatattagtaactattaaacaagtgttgcaagataaatgttactaaaacacatatgtgtagtagtg 4682325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 26205158 - 26205119
Alignment:
Q  21 atattagtaactattaaataaatgttgcaaggtgaatgtt 60  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  26205158 atattagtaactataaactaaatgttgcaaggtgaatgtt 26205119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 53303293 - 53303361
Alignment:
Q  18 tctatattagtaacta-ttaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 85  Q
    |||||||||||||||| ||||| || ||||||||| | ||||||||| ||||||| |||||||||||||    
T  53303293 tctatattagtaactacttaaacaagtgttgcaagataaatgttactaaaacacatatgtgtagtagtg 53303361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 8239063 - 8239114
Alignment:
Q  18 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaaca 69  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| |||||    
T  8239063 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 8239114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University