View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_7 (Length: 404)
Name: NF7716_low_7
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_7 |
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| [»] scaffold0210 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 3804644 - 3804269
Alignment:
| Q |
7 |
aagaatatgaaatagtaattaggcttaattaaacgcacttttgaccccctatgtttgtcatggtagcaatttacagagggtggtgatgcaaaccatgctt |
106 |
Q |
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| T |
3804644 |
aagaacatgaaatagtaattaggcttaattaaacgcacttttgaccccctatgtttgccatggtagcaatttacagagggtggtgatgcaaaccatgctt |
3804545 |
T |
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| Q |
107 |
ttcatgaggttattagtggtggagaaatggaacaccgtcgttttgtgtggatgaggaaggaagtatgcaaggatgatgaactcgttgagcaaaaagagaa |
206 |
Q |
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| T |
3804544 |
ttcatgaggttattagtggtggagaaatggaacaccgtcgttttgtgtggatgaggaaggaagtacgcaaggatgatgaactcgttgagcaaaaagagaa |
3804445 |
T |
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| Q |
207 |
gaaagttgatgatgagcgtttgatgagaaagaatcgccatcgccatcgccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggt |
306 |
Q |
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| T |
3804444 |
gaaagttgatgatgagcgtttgatgagaaagaatcgccatcg------ccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggt |
3804351 |
T |
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| Q |
307 |
ggttttcctgtgattccggttcacaaaaatggtgaagaaacaacggttatgatagaaaaacattatattcctaccaaatatt |
388 |
Q |
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| T |
3804350 |
ggttttcctgggattccggttcacaaaaatggtgaagaaacaacggttatgatagaaaaacattatattcctaccaaatatt |
3804269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 655529 - 655572
Alignment:
| Q |
35 |
ttaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
655529 |
ttaaatgcacttttggccccctatgtttgccatggtagcaattt |
655572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 26913547 - 26913649
Alignment:
| Q |
254 |
gccatgcaaaacatattcgtgatcattatcataagaagaagaatagtggaggtggttttcctgtgattccggttcacaaaaatggtgaagaaacaacggt |
353 |
Q |
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| T |
26913547 |
gccatgcaaaaaatattcgttatcattgtcacaaga---agaatagtggaggtggttttccattggttccggttcagaaggatggtaaagaaacaacggt |
26913643 |
T |
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| Q |
354 |
tatgat |
359 |
Q |
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| T |
26913644 |
tatgat |
26913649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 26913363 - 26913429
Alignment:
| Q |
82 |
gagggtggtgatgcaaaccatgcttttcatgaggttattagtggtggagaaatggaacaccgtcgtt |
148 |
Q |
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| T |
26913363 |
gagggtgatgattcaaacaatgtttttcatgaggttgtaagtggtggtgaaatggaacaccgtcgtt |
26913429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 51391563 - 51391519
Alignment:
| Q |
34 |
attaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
51391563 |
attaaacgcacttttgacccctcatgtttgttatggtagcaattt |
51391519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 19437315 - 19437358
Alignment:
| Q |
35 |
ttaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
19437315 |
ttaaatgcacttttgaccccctatgtttgtcatggtagcaattt |
19437358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 19573464 - 19573507
Alignment:
| Q |
35 |
ttaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
19573464 |
ttaaatgcacttttgaccccctatgtttgtcatggtagcaattt |
19573507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 19026 - 19069
Alignment:
| Q |
35 |
ttaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
19026 |
ttaaacacacttttgaccccttatgtttgtcatggtagcaattt |
19069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 26918 - 26961
Alignment:
| Q |
35 |
ttaaacgcacttttgaccccctatgtttgtcatggtagcaattt |
78 |
Q |
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| T |
26918 |
ttaaacacacttttgaccccttatgtttgtcatggtagcaattt |
26961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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