View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7716_low_9 (Length: 278)
Name: NF7716_low_9
Description: NF7716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7716_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 42933347 - 42933095
Alignment:
| Q |
7 |
tttggagttagcaacctattagtactttattacttacacttatctctaagtttggtttggttttcttaatttgtttaagttcggtgatcccaatttcaca |
106 |
Q |
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| T |
42933347 |
tttggagttagcaacctattagtactttattacttacacttatctctaagtttggtttggttttcttaatttgtttaagttcggtgatcccaatttcaca |
42933248 |
T |
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| Q |
107 |
tctcaaccatttgtttatactactataattgattgtaactagtaacggccttttattttgtcaaaagaaaaggaacacatgtatgtaaaaatatataccg |
206 |
Q |
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| T |
42933247 |
tctcaaccatttgtttatacta---taattgattgtaactagtaacggccttttattttgtcaaaagaaaaggaacacatgtatgtaaaaatatataccg |
42933151 |
T |
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| Q |
207 |
ttcaatgtacatattaaagaattttgccagcaatacactctgaaacacattctttt |
262 |
Q |
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| T |
42933150 |
ttcaatgtacatattaaagaattatgccatcaatacactctgaaacacattctttt |
42933095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 42933944 - 42933884
Alignment:
| Q |
7 |
tttggagttagcaacctattagtactttattacttacacttatctctaagtttggtttggt |
67 |
Q |
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| T |
42933944 |
tttggagttagcaacctactagtaatttattacttacacttatctctaagtttggtttggt |
42933884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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