View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_high_3 (Length: 398)
Name: NF7717_high_3
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_high_3 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 41 - 380
Target Start/End: Original strand, 3394 - 3733
Alignment:
| Q |
41 |
atatttagataataaaaagttatttgagttgggtcttgaagttaaccagagccgaaacataactcaatgttttgagagtgcaactaacgaggttctaact |
140 |
Q |
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| T |
3394 |
atatttagataataaaaagttatttgagttgggtcttgaagctcaccagagctgaaacatacctcaatgttttgagagtgcaactaacgaggttctaact |
3493 |
T |
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| Q |
141 |
tcggtagtgggagtcgaactcacatctttgccgagtaggaattgattcctaaccaacttgaccaaattttgttgnnnnnnnccgctaagtttaattaaaa |
240 |
Q |
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| T |
3494 |
tcggtagtgggagtcgaactcacatctttgccgagtaggaattgattcctaaccaacttgaccaaattttgttgtttttttccgctaagtttaattaaaa |
3593 |
T |
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| Q |
241 |
gggccatatatagttaagccattctatcaagctaaacatatactaaaaaacttataatttagttgttgattaatgtgcatacaggttgggataaataaag |
340 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
3594 |
gggccatatatagttaagtcattctatcaagctaaacatatactaaaaaacttataattaagttgttgaataatgtgtatacaggttgggataaataaag |
3693 |
T |
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| Q |
341 |
aagtggagaaattgatggaaaacaaggatttatatcatgt |
380 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
3694 |
aagtggagaaattaatggaaaacaaggatttatatcatgt |
3733 |
T |
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