View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_high_6 (Length: 293)
Name: NF7717_high_6
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24563373 - 24563113
Alignment:
| Q |
1 |
aaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgttgaaggaattacaacgaggacatttcaaagcaagatgatgatgatgat |
100 |
Q |
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| T |
24563373 |
aaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgttgaaggaattacaacgaggacatttcaaagcaagatgatgatgatgat |
24563274 |
T |
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| Q |
101 |
---tattctggttatggtaggttttcatccttctatcttcctcaatgcagaaaagatttccatctgccatggaataaatttcttgcatttcttgt-tctc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24563273 |
gattattctggttatggtaggttttcatccttctatcttcctcaatgcagaaaagatttccatctgccatggaataaatttcttgcatttcttgtgtctc |
24563174 |
T |
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| Q |
197 |
agattttgttctgtattttgtagaattcgtgtgtgagtggtttgaggaatagtggaaagta |
257 |
Q |
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| T |
24563173 |
agattttgttctgtattttttagaattcgtgtgtgagtggtttgaggaatagtggaaagta |
24563113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 3908555 - 3908487
Alignment:
| Q |
6 |
acgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgttgaaggaattacaacgaggaca |
74 |
Q |
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| T |
3908555 |
acgaggctgagataggctatagttgttgtaatagcagaacttggtgttgaatgaatcacacctaggaca |
3908487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 45763708 - 45763783
Alignment:
| Q |
4 |
tgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgttgaaggaattacaacgaggacatttca |
79 |
Q |
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| T |
45763708 |
tgacgaggctgggagaggttgtagttattgtagtaacagaatttggtgttgatggagtcacagcgaggacatttca |
45763783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 53435369 - 53435451
Alignment:
| Q |
30 |
gttgtagtagcagaatttcgtgttgaaggaattacaacgaggacatttcaaagcaagatgatgatgatgattattctggttatggt |
115 |
Q |
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| T |
53435369 |
gttgtagtagcagaattttgtgttgtaggaatcacagtgaagacatttcaaagcaagaagatgatgatgatt---ctggttatggt |
53435451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 5211259 - 5211297
Alignment:
| Q |
16 |
gagaggttgtagttgttgtagtagcagaatttcgtgttg |
54 |
Q |
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| T |
5211259 |
gagagattgtagttgttgtagtagcagaattttgtgttg |
5211297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33823885 - 33823833
Alignment:
| Q |
1 |
aaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgtt |
53 |
Q |
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||||| |||||||||| |||||| |||||||||||||| || ||||| ||||| |
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| T |
33823885 |
aaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt |
33823833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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