View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_low_11 (Length: 241)
Name: NF7717_low_11
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24563373 - 24563596
Alignment:
| Q |
1 |
tctgtaaaaactgccgtcgctactggaccaaaggtggcatccttcgtaacgtccccgtcggcggtggttcacgcaaatcaaagaaatcaaaaacggcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |
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| T |
24563373 |
tctgtaaaaactgccgtcgctactggaccaaaggtggcatccttcgtaacgtccccgtcggcggtggttcccagaaatcaaagaaatcaaagacggcatc |
24563472 |
T |
|
| Q |
101 |
atcatcttccatcacctcttcagcagcaaccacgccaacaccgcttcaaccggaagctgataagtcagattctcactccaacagtgatggctcaaccatt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563473 |
atcatcttccatcccctcttcagcagcaaccacgccaacaccgcttcaaccggaagctgataagtcagattctcactccaacagtgatggctcaaccatt |
24563572 |
T |
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| Q |
201 |
agggttaactctgttatagaaaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
24563573 |
agggttaactctgttatagaaaat |
24563596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 45763705 - 45763637
Alignment:
| Q |
1 |
tctgtaaaaactgccgtcgctactggaccaaaggtggcatccttcgtaacgtccccgtcggcggtggtt |
69 |
Q |
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|||| ||||||||||| || |||||||| ||||| || | || ||||||||||||||||| ||||||| |
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| T |
45763705 |
tctgcaaaaactgccgacgttactggactaaaggcggtgttctccgtaacgtccccgtcggtggtggtt |
45763637 |
T |
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