View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_low_2 (Length: 438)
Name: NF7717_low_2
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_low_2 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 47473376 - 47473797
Alignment:
| Q |
17 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaaccaggagcaaatggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473376 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaaccaggagcaaatggt |
47473475 |
T |
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| Q |
117 |
tccttttccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcg |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473476 |
tcctattccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcg |
47473575 |
T |
|
| Q |
217 |
cgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaatatact |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47473576 |
cgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatact |
47473675 |
T |
|
| Q |
317 |
taacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473676 |
taacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaa |
47473775 |
T |
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| Q |
417 |
tttgaattgtcaataactcaac |
438 |
Q |
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|||||||||||||||||||||| |
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| T |
47473776 |
tttgaattgtcaataactcaac |
47473797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 157 - 438
Target Start/End: Original strand, 47476814 - 47477095
Alignment:
| Q |
157 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| ||||| | |
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| T |
47476814 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatag |
47476913 |
T |
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| Q |
257 |
gatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctac |
356 |
Q |
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| T |
47476914 |
gatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccaccagtttcttaagttcacctac |
47477013 |
T |
|
| Q |
357 |
ctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaac |
438 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477014 |
ctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaac |
47477095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 47486090 - 47486483
Alignment:
| Q |
17 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtc-----acatttaacacaaacaagcaaccaggagcaa |
111 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||||| |
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| T |
47486090 |
actatatgttacaattccaataccaagctctctgtatcaacaaaagctttaaataagtgaagtagtacaacatttaacacaaacatccaa--aagagcaa |
47486187 |
T |
|
| Q |
112 |
atggttccttttccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaa |
211 |
Q |
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| |||| |||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| || ||||||||||| ||||||| |
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| T |
47486188 |
acagttctatttctttaaccctcttttcaagtaac--ttaatcaaagaacttggacaggaactcaaactaaccggcatagtggaactatctcatcctcaa |
47486285 |
T |
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| Q |
212 |
tgtcgcgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaat |
311 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
47486286 |
tgtcacgagtccaaagagaccactccatttgtacagctgtgatgggatgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctat |
47486385 |
T |
|
| Q |
312 |
atacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
409 |
Q |
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|||||| |||||||| |||||||||| ||| ||||||||||||||| ||| | || |||||||||||||| ||||||||| |||||| || ||||| |
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| T |
47486386 |
atacttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 47469234 - 47469374
Alignment:
| Q |
207 |
ctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagt |
306 |
Q |
| |
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|||||| || ||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || || |||||||| | || || ||||||| | |
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| T |
47469234 |
ctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagcatgtgcccttctgattgtatcagtactagcctcagataat |
47469333 |
T |
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| Q |
307 |
ccaatatacttaacttttccctcttccaccagtttcttaag |
347 |
Q |
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|| || ||||||| ||||||||||| |||| |||||||| |
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| T |
47469334 |
cctatgtacttaatctttccctcttcaaccaacttcttaag |
47469374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 47476620 - 47476703
Alignment:
| Q |
17 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
101 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || || || |||||||||||| |||| |
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| T |
47476620 |
actatatggtacaattccaataccaagctctctatatcaacaaaagcttgaaataagtaaaatctca-ttaacacaaacatgcaa |
47476703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 17386521 - 17386566
Alignment:
| Q |
40 |
caagctctctgtatcaacaaaagctttaaattagtgaagtcacatt |
85 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17386521 |
caagctctctgtatcaacaaaaactttaaatcagtgaagtcacatt |
17386566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 44903750 - 44903806
Alignment:
| Q |
45 |
tctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
101 |
Q |
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|||||| |||||||||| |||||||||||| |||||||||| |||||||||| |||| |
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| T |
44903750 |
tctctgcatcaacaaaaactttaaattagtaaagtcacattcaacacaaacatgcaa |
44903806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 49091605 - 49091666
Alignment:
| Q |
40 |
caagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
101 |
Q |
| |
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|||| |||||| |||||||||| |||||||||||| || ||||||| |||||||||| |||| |
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| T |
49091605 |
caagttctctgcatcaacaaaaactttaaattagtaaattcacattcaacacaaacatgcaa |
49091666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 17225952 - 17225908
Alignment:
| Q |
57 |
caaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
101 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
17225952 |
caaaagctttaaattagtgaaaccacattcaacacaaacacgcaa |
17225908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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