View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7717_low_5 (Length: 369)
Name: NF7717_low_5
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 32803979 - 32803632
Alignment:
| Q |
1 |
tcaaattacttcattattataacatctttgtctcactgtctatgttctaaatttttatttcttaattctctctctttttacttgagttgagtctctgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803979 |
tcaaattacttcattattataacatctttgtctcactgtctatgttctaaatttttatttcttaattctctctctttttacttgagttgagtctctgaaa |
32803880 |
T |
|
| Q |
101 |
ggtttggtatctcttctatcttgtaaccaatagaataaacaaaacaaataaatgaaagaaagnnnnnnnnnttagacagtg---nnnnnnnnaatcaaac |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
32803879 |
ggtttggtatctcttctatcttgtaaccaatagaataaacaaaacaaataaatgaaagaaa-----aaaaattagacagtgtttttttttttaatcaaac |
32803785 |
T |
|
| Q |
198 |
cccttacttgattctcatccaataattgcatctaattctctcttctaagcacctcatcactttcctttaccctatcatcatccatttgagtaagttagtg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803784 |
cccttacttgattctcatccaataattgcatctaattctctcttctaagca---catcactttcctttaccctatcatcatccatttgagtaagttagtg |
32803688 |
T |
|
| Q |
298 |
agtgagcatcatatgttaggtcatcataaacatacatatcccttttgtttcttttt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803687 |
agtgagcatcatatgttaggtcatcataaacatacatatcccttttgtttcttttt |
32803632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University