View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_low_8 (Length: 289)
Name: NF7717_low_8
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_low_8 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 6452113 - 6451843
Alignment:
| Q |
19 |
catccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaatttaacgtgtctattttat |
118 |
Q |
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| T |
6452113 |
catccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaatttaacatgtctattttat |
6452014 |
T |
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| Q |
119 |
atgaacgttctaattggttttatgttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtca |
218 |
Q |
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| T |
6452013 |
atgaacgttctaattggttttatgttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtca |
6451914 |
T |
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| Q |
219 |
cttgaagtcatcagactttcttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaat |
289 |
Q |
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| T |
6451913 |
cttgaagtcatcagactttcttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaat |
6451843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 6458205 - 6457959
Alignment:
| Q |
20 |
atccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaa--cggttagtaaatttaacgtgtctatttta |
117 |
Q |
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| T |
6458205 |
atccctaccctcgcagggttagaagtggtagaaaaccaaccagaaaaggttagtttgctgccgaaatatagcggttagcgaatttaatgtgttcattttg |
6458106 |
T |
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| Q |
118 |
tatgaacgttctaattggttttatg-ttatatgattcttaacagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggt |
216 |
Q |
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| T |
6458105 |
tagaaacgttctaattggttttatgctttttttattcgtaacagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggt |
6458006 |
T |
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| Q |
217 |
cacttgaagtcatcagactttcttatgtatggaataaagtcattgtc |
263 |
Q |
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| T |
6458005 |
cacttgaagtcatcagacttccttatgtatggaataaaatcactgtc |
6457959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 7460225 - 7460172
Alignment:
| Q |
187 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
240 |
Q |
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| T |
7460225 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttctt |
7460172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 7471801 - 7471748
Alignment:
| Q |
187 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
240 |
Q |
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| T |
7471801 |
atttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttctt |
7471748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 6275484 - 6275431
Alignment:
| Q |
187 |
atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
240 |
Q |
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| T |
6275484 |
atttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttctt |
6275431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 6322350 - 6322298
Alignment:
| Q |
188 |
tttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt |
240 |
Q |
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| T |
6322350 |
tttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttctt |
6322298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 9603361 - 9603488
Alignment:
| Q |
157 |
acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagt |
256 |
Q |
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||||||| ||| ||||||| ||| |||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| | |
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| T |
9603361 |
acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
9603460 |
T |
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| Q |
257 |
cattgtcacaagacgttttgcctttgtt |
284 |
Q |
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| T |
9603461 |
cattgtctcaagatgtgttacctttgtt |
9603488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 9589103 - 9589146
Alignment:
| Q |
198 |
aagagatgaaaattttggtcacttgaagtcatcagactttctta |
241 |
Q |
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| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttcctta |
9589146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 42687709 - 42687773
Alignment:
| Q |
190 |
tatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaa |
254 |
Q |
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| T |
42687709 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaa |
42687773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 42694120 - 42694073
Alignment:
| Q |
194 |
ttccaagagatgaaaattttggtcacttgaagtcatcagactttctta |
241 |
Q |
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| T |
42694120 |
ttccaagagatgaagcttttggtcacttgaaatcatcagattttctta |
42694073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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