View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7717_low_9 (Length: 276)
Name: NF7717_low_9
Description: NF7717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7717_low_9 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 6451541 - 6451806
Alignment:
| Q |
11 |
tgagaagaaaatacgagttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatg |
110 |
Q |
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| T |
6451541 |
tgagaaaaaaatacgagttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatg |
6451640 |
T |
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| Q |
111 |
aataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggc |
210 |
Q |
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| T |
6451641 |
aataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggc |
6451740 |
T |
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| Q |
211 |
tgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaa |
276 |
Q |
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| T |
6451741 |
tgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaa |
6451806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 6457727 - 6457894
Alignment:
| Q |
107 |
gatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatt |
206 |
Q |
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| T |
6457727 |
gatgaacaaggtacctttgattacatgaggaggtggaaacttgaggacttgttcaccgtcagtgcgaaagatttccttaagggccggtaagggactaatt |
6457826 |
T |
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| Q |
207 |
tggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatc |
274 |
Q |
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| T |
6457827 |
tgactaagtatatctgtaggaagcttaatcccaccttcgaaaagtccacgtacttcatcgaagctatc |
6457894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 9603701 - 9603530
Alignment:
| Q |
105 |
aagatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctga |
204 |
Q |
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| T |
9603701 |
aagattaataatgtacctctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactga |
9603602 |
T |
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| Q |
205 |
tttggctgagtatatctgtaggaagcttaattccaccttcgaa-aagtccacgcacttcatcgaagctatcaa |
276 |
Q |
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| T |
9603601 |
ttttgctcaatatatgtgtaggaagttcaattccaccttcaaataagt-cacgcacttcatcgaagctatcaa |
9603530 |
T |
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