View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7718_high_3 (Length: 248)
Name: NF7718_high_3
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 14737684 - 14737896
Alignment:
| Q |
1 |
tttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatgcttattgtataatctcaagaccccttgtt |
100 |
Q |
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| T |
14737684 |
tttactttgaataagatatttgctaacaagatcaagttctttctcattaggatcgtccgctgttgtcaatgcttgttgtataatctcaagaccccttgtt |
14737783 |
T |
|
| Q |
101 |
actatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagttttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14737784 |
actatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagttttgtg |
14737883 |
T |
|
| Q |
201 |
gcagatccaagaa |
213 |
Q |
| |
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|| |||||||||| |
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| T |
14737884 |
gcggatccaagaa |
14737896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14744265 - 14744465
Alignment:
| Q |
1 |
tttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatg-cttattgtataatctcaagaccccttgt |
99 |
Q |
| |
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||||| |||||||||||||| | |||||||||||| |||||| |||||||||||||||| || | |||||| || |||||| ||||||||| ||||||| |
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| T |
14744265 |
tttaccttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctatcaatgttttgttgtatgatctcaagatcccttgt |
14744364 |
T |
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| Q |
100 |
tactatcagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagt |
194 |
Q |
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||||| |||||||||| || |||||||||||||||||| |||| | |||| |||||| ||||| ||||||||| ||||| |||| ||| ||||||| |
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| T |
14744365 |
tactaatagacacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttttatcatttattttttcgaccatgttttcctc-aacaagt |
14744463 |
T |
|
| Q |
195 |
tt |
196 |
Q |
| |
|
|| |
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| T |
14744464 |
tt |
14744465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 10487759 - 10487854
Alignment:
| Q |
41 |
ttctcattgggatcgttcgttgttgtcaatgcttattgtataatctcaagaccccttgttactatcagacacatttagggagtaacaagagcaaaa |
136 |
Q |
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|||||||||||||| || | ||||||||||| || ||||||||| |||||| |||||||||||||| |||| | || ||||||||| ||||||| |
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| T |
10487759 |
ttctcattgggatcatttgatgttgtcaatgattgttgtataatatcaagatcccttgttactatcggacaactctaaggagtaacagtagcaaaa |
10487854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17589094 - 17588893
Alignment:
| Q |
1 |
tttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatgcttattgtataatctcaagaccccttgtt |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
17589094 |
tttactttgaataagatatttgcgaacaagatcaagttctttctcattgggatcgttcgctgttgtcaatgcttgttgtataatctcaagaccccttgtt |
17588995 |
T |
|
| Q |
101 |
actatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagttttgtg |
200 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17588994 |
actatcggacacatttagggagtaacaagagcaaaaaggtgttgcatcggcttttcatcaaatattttttcaaccatatttttctctaacaagttttgtg |
17588895 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
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|
| T |
17588894 |
gc |
17588893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 17583049 - 17582855
Alignment:
| Q |
7 |
ttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatg-cttattgtataatctcaagaccccttgttactat |
105 |
Q |
| |
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|||||||||||||| | |||||||||||| |||||| |||||||||||||||| || |||||||| || |||||||||||||||| |||||||||||| |
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| T |
17583049 |
ttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctgtcaatgttttgttgtataatctcaagatcccttgttactaa |
17582950 |
T |
|
| Q |
106 |
cagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctctaacaagttt |
196 |
Q |
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|||||||||| || ||||||| |||||||||| || | | |||| |||||| ||||| ||||||||| ||||| |||| ||| ||||||||| |
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| T |
17582949 |
tagacacatttgaggagaggagtaataagagcaaaagggcgctacatcgactttttatcatttattttttcgaccatgttttcctc-aacaagttt |
17582855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6071330 - 6071373
Alignment:
| Q |
1 |
tttactttgaataagatatttgctaacaagatcaagttctttct |
44 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
6071330 |
tttaccttgaataagatatttgctaacaagattaagttccttct |
6071373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14144289 - 14144327
Alignment:
| Q |
1 |
tttactttgaataagatatttgctaacaagatcaagttc |
39 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||| |
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| T |
14144289 |
tttaccttgaataagatattcgctaacaagatcaagttc |
14144327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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