View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7718_low_12 (Length: 241)
Name: NF7718_low_12
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9384603 - 9384825
Alignment:
| Q |
1 |
aaaacatgaagctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcct |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384603 |
aaaacatgaagctctcgttcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcct |
9384702 |
T |
|
| Q |
101 |
aatgagctaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384703 |
aatgagttaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgt |
9384802 |
T |
|
| Q |
201 |
ctctaacaatctcaatgcccttt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9384803 |
ctctaacaatctcaatgcccttt |
9384825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 31947700 - 31947911
Alignment:
| Q |
12 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
111 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
|
| Q |
112 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatc |
211 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatctaccttctaaactatcaacattaacattcaatgtctctgacaatc |
31947899 |
T |
|
| Q |
212 |
tcaatgcccttt |
223 |
Q |
| |
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| |||||||||| |
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| T |
31947900 |
ttaatgcccttt |
31947911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 31455655 - 31455574
Alignment:
| Q |
127 |
actctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaaca |
208 |
Q |
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||||||||| ||| ||||||||| | |||||||| ||||||||||| | | | |||||||||||||||||||||||||| |
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| T |
31455655 |
actctatttcgtactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattcaatgtctctaaca |
31455574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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