View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7718_low_14 (Length: 228)
Name: NF7718_low_14
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 29071437 - 29071626
Alignment:
| Q |
19 |
acaatagagcaagtaagtattgataccattttttccatgcacatgcaacctgatcaggtccacataattaagacgtgacctagaattctacaaacgatac |
118 |
Q |
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| T |
29071437 |
acaatagagcaagtaagtattggtaccattttttccatgcacatgcaacctgatcaggtccacataattaagacgtgacctagaattctacaaacgatac |
29071536 |
T |
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| Q |
119 |
catgtgtctgtgccaatgcaaaaccaaaaatggaaagttattgaaaacgtggcacacacaataactatcaattttccttatttgtgatga |
208 |
Q |
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| T |
29071537 |
catgtgtctgtgccaatgaaaaaccaaaaatggaaagttattgaaaacgtggcacacacaataacgatcaattttccttatttgtgatga |
29071626 |
T |
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