View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7718_low_4 (Length: 308)
Name: NF7718_low_4
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9202780 - 9203057
Alignment:
| Q |
19 |
cttcaatctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9202780 |
cttcaatctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaa |
9202879 |
T |
|
| Q |
119 |
attataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9202880 |
attataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcata |
9202979 |
T |
|
| Q |
219 |
ggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
9202980 |
ggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcgattctgtttcgagtaccgtcgcatatt |
9203057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9175751 - 9176028
Alignment:
| Q |
19 |
cttcaatctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaa |
118 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
9175751 |
cttcattctttgaagcattacaatatttacttccaacactccagtcaagaatcataggaagcctctcataaggaaaattgtccaaatcagaaacagtgaa |
9175850 |
T |
|
| Q |
119 |
attataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9175851 |
attataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagcttgtatagttatattcctcatcata |
9175950 |
T |
|
| Q |
219 |
ggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9175951 |
ggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcaattctgtttcgagtaccgttgcatatt |
9176028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 9157794 - 9158061
Alignment:
| Q |
19 |
cttcaatctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaa |
118 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||| ||||| ||| || |
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| T |
9157794 |
cttcattctttgaagcattacaatatttacttccaacactccagtcaagaatcataggaagcctctcataaggaaaattatccaaatgagaaatagaaaa |
9157893 |
T |
|
| Q |
119 |
attataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcata |
218 |
Q |
| |
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||||||||| |||| |||||||||||| |||| ||||| |||||||| || | ||| || ||| ||||| || |||| ||||||||||||||||| |
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| T |
9157894 |
attataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaagcttctatacttatattcctcatcata |
9157993 |
T |
|
| Q |
219 |
ggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtacc |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
9157994 |
ggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgattacc |
9158061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 9114661 - 9114391
Alignment:
| Q |
26 |
ctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaaattataa |
125 |
Q |
| |
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||||||||| ||||||| || |||| |||||||||| ||||||||||||||||||| | |||||| |||||||||| ||||||||| ||||||||| |
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| T |
9114661 |
ctttgaagccttacaattttcacttgcaacactccaatcaagaatcaaaggaagctccgtgtgaggaaatttgtccaaatgagaaacagaaaaattataa |
9114562 |
T |
|
| Q |
126 |
aatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcataggtggaa |
225 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||| || ||| | | || | ||| || ||||||||||||||||||| ||||||||| |
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| T |
9114561 |
gctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagcaaaagcttctatagttatattcctcatcttaggtggaa |
9114462 |
T |
|
| Q |
226 |
tatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatatt |
296 |
Q |
| |
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||||||||| ||||||||||||||| |||||| |||| ||||||||||| |||||| ||||||| |||||| |
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| T |
9114461 |
tatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgattaccgttacatatt |
9114391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 9163916 - 9164179
Alignment:
| Q |
26 |
ctttgaagcattacaatgtttacttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaaattataa |
125 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||| ||||||| |||||||||| ||| | | ||||| | ||||||| | ||||| |||||||||| |
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| T |
9163916 |
ctttgaagccttacaattttcacttccaacactccaatcaagaaccaaaggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataa |
9164015 |
T |
|
| Q |
126 |
aatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcataggtggaa |
225 |
Q |
| |
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||||||| |||||||||||| |||| ||||| || ||||| || | ||| || ||| | ||| ||||| | |||||||||||||||||||||||| |
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| T |
9164016 |
aatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaa |
9164115 |
T |
|
| Q |
226 |
tatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgtt |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| ||||| |||| |||||| ||||||| |
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| T |
9164116 |
tatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgtt |
9164179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 9220274 - 9220497
Alignment:
| Q |
49 |
ttccaacactccagtcaagaatcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaaattataaaatccatttttaacaacaaacga |
148 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| ||| | |||||||||| ||||||| |||||||| |||||||| |||||| |||||||||||| || |
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|
| T |
9220274 |
ttcccacactccaatcaagaatcaatggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatga |
9220373 |
T |
|
| Q |
149 |
attgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaata |
248 |
Q |
| |
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|| ||||| |||||||| || | ||| || ||| |||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9220374 |
ataactacaccccaaagaatccgtggaattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaata |
9220473 |
T |
|
| Q |
249 |
cccgaacatattccgttttcaatt |
272 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
9220474 |
cccgaacatgttccgttttcaatt |
9220497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 1840392 - 1840314
Alignment:
| Q |
184 |
aattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatattcc |
262 |
Q |
| |
|
|||||| || ||||||| |||||| ||||| |||| |||||||||||||| ||||| || |||||||||||| |||| |
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|
| T |
1840392 |
aattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc |
1840314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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