View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7718_low_5 (Length: 306)
Name: NF7718_low_5
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 54101237 - 54101523
Alignment:
| Q |
3 |
gtaagagaagaaaagaaacacatcactggtattgattatcagttaaacacctcttatactgcagggttgtgagaatactactcccaacatccacaaagta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54101237 |
gtaagagaagaaaagaaacacatcactggtattgattatcagttaaacacctcttatactgcagtgttgtgagaatactactcc-aacatccacaaagta |
54101335 |
T |
|
| Q |
103 |
gtgacctctcaagtttataatggtaaagcttgacaaataacaaactacaagctctacacctctgctcccttcccaaaagtccccctccttcctcaagagt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54101336 |
gtgacctctcaagtttataatggtaaagcttgacaaataacaaactacaagctctacacctctgctcccttaccaaaagtccccctccttcctcaagagt |
54101435 |
T |
|
| Q |
203 |
ccaagacttacacctctgcctcctccattacactcccaactccgcaggtttatttggacataccataacatcaaaaggcccatcttgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54101436 |
ccaagacttacacctctgcctcctccattacattcccaactccgcaggtttatttggacataccataacatcaaaaggcccatcttgt |
54101523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University