View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7718_low_6 (Length: 300)
Name: NF7718_low_6
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7718_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 40714668 - 40714385
Alignment:
| Q |
1 |
acgctacagaatgtacatgatgttcattttatgcagtttatacttcatatactaactcttcgttagaaattcatcaattgactcgtatatggaatgggaa |
100 |
Q |
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| T |
40714668 |
acgctacagaatgtacatgatgttcattttatgcagtttatacttcatatactaactcttcgttagaaattcatcaattgactcgtatatggaatgggaa |
40714569 |
T |
|
| Q |
101 |
aatattattttggtctgtgtttatatcatagttcatgatttttactctgtatttttgtctatggtttgatattttataccagttgtatatcaaaaataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40714568 |
aatattattttggtctgtgtttatatcatagttcatgatttttactctgtatttttgtccatggtttgatattttataccagttgtatatcaaaaataat |
40714469 |
T |
|
| Q |
201 |
agttatttattaggtattcttagaatcaattaggtttagatgg-nnnnnnnnnatcatgcaggtttcttgttgctgttggtgtg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40714468 |
agttatttattaggtattcttagaatcaattaggtttagatggttttttttttatcatgcaggtttcttgttgctgttggtgtg |
40714385 |
T |
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