View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7718_low_7 (Length: 272)

Name: NF7718_low_7
Description: NF7718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7718_low_7
NF7718_low_7
[»] chr2 (30 HSPs)
chr2 (1-272)||(387132-387403)
chr2 (1-249)||(39338717-39338964)
chr2 (1-249)||(10524079-10524329)
chr2 (1-244)||(7874278-7874519)
chr2 (1-249)||(14106374-14106623)
chr2 (1-232)||(14405197-14405428)
chr2 (47-224)||(5254263-5254438)
chr2 (3-194)||(17116733-17116923)
chr2 (116-219)||(4471935-4472035)
chr2 (109-231)||(10173539-10173659)
chr2 (147-224)||(1269490-1269567)
chr2 (125-219)||(22885111-22885202)
chr2 (149-224)||(16959989-16960064)
chr2 (1-66)||(7460839-7460905)
chr2 (85-232)||(37770580-37770723)
chr2 (147-220)||(2062900-2062973)
chr2 (147-219)||(13337286-13337358)
chr2 (147-219)||(15126407-15126479)
chr2 (1-210)||(16952236-16952443)
chr2 (1-210)||(17022901-17023108)
chr2 (1-210)||(17060207-17060414)
chr2 (156-219)||(36276178-36276240)
chr2 (147-209)||(7695985-7696047)
chr2 (182-219)||(4162052-4162089)
chr2 (172-232)||(23650384-23650444)
chr2 (179-219)||(27739987-27740027)
chr2 (171-219)||(33788653-33788701)
chr2 (145-216)||(18681080-18681151)
chr2 (117-210)||(17079190-17079281)
chr2 (147-213)||(34230219-34230285)
[»] chr3 (33 HSPs)
chr3 (1-244)||(19176489-19176733)
chr3 (1-234)||(43012372-43012604)
chr3 (1-272)||(20611741-20612011)
chr3 (1-249)||(23328202-23328449)
chr3 (1-249)||(2392358-2392605)
chr3 (1-244)||(40023424-40023666)
chr3 (13-244)||(9583918-9584147)
chr3 (1-219)||(17550969-17551181)
chr3 (13-249)||(45163835-45164072)
chr3 (1-200)||(47235729-47235927)
chr3 (1-270)||(34475608-34475875)
chr3 (1-249)||(45398778-45399025)
chr3 (1-235)||(31482880-31483112)
chr3 (1-249)||(2394122-2394352)
chr3 (1-184)||(53247947-53248130)
chr3 (171-224)||(14755286-14755339)
chr3 (147-224)||(47945713-47945790)
chr3 (29-163)||(21342603-21342735)
chr3 (98-219)||(33143899-33144018)
chr3 (1-66)||(30352293-30352356)
chr3 (147-216)||(37123397-37123466)
chr3 (147-216)||(39021273-39021342)
chr3 (147-243)||(1652883-1652979)
chr3 (180-224)||(14879442-14879486)
chr3 (162-232)||(14193939-14194009)
chr3 (162-219)||(30127274-30127332)
chr3 (162-219)||(5556582-5556639)
chr3 (182-219)||(20710740-20710777)
chr3 (162-219)||(2782081-2782138)
chr3 (147-216)||(30935387-30935456)
chr3 (149-213)||(823434-823498)
chr3 (183-219)||(24099360-24099396)
chr3 (163-219)||(31424248-31424304)
[»] chr7 (38 HSPs)
chr7 (1-272)||(3867074-3867345)
chr7 (1-249)||(5860140-5860387)
chr7 (1-249)||(38306243-38306490)
chr7 (2-269)||(33435070-33435337)
chr7 (1-272)||(47325737-47326008)
chr7 (8-238)||(41089607-41089836)
chr7 (1-239)||(34389954-34390191)
chr7 (1-249)||(35745674-35745926)
chr7 (1-272)||(3419507-3419779)
chr7 (13-249)||(37794971-37795206)
chr7 (1-272)||(10244140-10244411)
chr7 (1-209)||(44353415-44353623)
chr7 (93-249)||(6584891-6585046)
chr7 (1-272)||(25160773-25161040)
chr7 (1-104)||(31971986-31972089)
chr7 (88-207)||(48161964-48162083)
chr7 (1-268)||(8745115-8745383)
chr7 (148-219)||(9349761-9349832)
chr7 (162-232)||(1320793-1320863)
chr7 (162-216)||(24324810-24324864)
chr7 (162-232)||(42533264-42533334)
chr7 (162-219)||(6716748-6716805)
chr7 (162-219)||(13311851-13311908)
chr7 (109-231)||(3478352-3478471)
chr7 (147-216)||(12480901-12480970)
chr7 (179-219)||(38485568-38485608)
chr7 (1-66)||(6585045-6585111)
chr7 (162-232)||(16828948-16829018)
chr7 (162-232)||(16954652-16954722)
chr7 (141-219)||(23983207-23983285)
chr7 (147-232)||(46133274-46133360)
chr7 (1-66)||(3419248-3419313)
chr7 (182-219)||(46262151-46262188)
chr7 (185-219)||(17802851-17802885)
chr7 (194-232)||(44755625-44755663)
chr7 (162-219)||(11379139-11379196)
chr7 (182-219)||(27993568-27993605)
chr7 (182-219)||(35206725-35206762)
[»] chr4 (32 HSPs)
chr4 (1-272)||(8254985-8255256)
chr4 (1-272)||(8268403-8268674)
chr4 (1-272)||(30964399-30964666)
chr4 (1-249)||(31050513-31050761)
chr4 (3-244)||(4305712-4305951)
chr4 (1-238)||(2825776-2826011)
chr4 (4-214)||(30167419-30167628)
chr4 (1-203)||(35341192-35341391)
chr4 (115-232)||(25753171-25753285)
chr4 (1-66)||(8705996-8706061)
chr4 (85-219)||(38637171-38637301)
chr4 (147-232)||(22811157-22811242)
chr4 (166-219)||(40813797-40813850)
chr4 (147-232)||(53823418-53823503)
chr4 (147-219)||(38929839-38929911)
chr4 (175-217)||(39421038-39421080)
chr4 (160-219)||(36962626-36962684)
chr4 (161-219)||(39041285-39041343)
chr4 (150-219)||(46698784-46698854)
chr4 (162-219)||(6599957-6600014)
chr4 (147-216)||(16501746-16501815)
chr4 (162-219)||(21387216-21387273)
chr4 (147-232)||(35800488-35800573)
chr4 (147-232)||(49747526-49747611)
chr4 (147-219)||(28966879-28966951)
chr4 (146-224)||(2061734-2061812)
chr4 (185-219)||(53756768-53756802)
chr4 (162-211)||(2792286-2792335)
chr4 (1-34)||(20464786-20464819)
chr4 (150-219)||(24740103-24740172)
chr4 (187-219)||(37707392-37707424)
chr4 (147-207)||(41117964-41118024)
[»] chr1 (30 HSPs)
chr1 (1-272)||(41920411-41920686)
chr1 (1-272)||(24449782-24450053)
chr1 (15-270)||(5389287-5389542)
chr1 (1-244)||(31585611-31585854)
chr1 (1-239)||(5459153-5459390)
chr1 (1-270)||(46692671-46692940)
chr1 (1-249)||(7857635-7857882)
chr1 (41-269)||(24684370-24684598)
chr1 (1-244)||(24658916-24659157)
chr1 (1-244)||(27031693-27031934)
chr1 (45-272)||(30685800-30686027)
chr1 (1-244)||(46814319-46814561)
chr1 (152-249)||(20113523-20113620)
chr1 (1-102)||(6764233-6764334)
chr1 (147-219)||(19598648-19598720)
chr1 (171-232)||(6583237-6583298)
chr1 (147-212)||(27102210-27102275)
chr1 (147-232)||(32864558-32864643)
chr1 (162-232)||(17033585-17033655)
chr1 (171-232)||(9313310-9313371)
chr1 (171-219)||(38544759-38544807)
chr1 (147-232)||(34774870-34774955)
chr1 (162-219)||(15840924-15840981)
chr1 (170-219)||(22200020-22200069)
chr1 (156-216)||(2877652-2877711)
chr1 (179-219)||(4651792-4651832)
chr1 (170-209)||(22239699-22239738)
chr1 (147-216)||(16147570-16147639)
chr1 (147-215)||(10785456-10785524)
chr1 (179-219)||(30655572-30655612)
[»] chr8 (25 HSPs)
chr8 (1-249)||(24995246-24995494)
chr8 (1-272)||(31207214-31207484)
chr8 (1-272)||(9519457-9519729)
chr8 (3-272)||(37986712-37986981)
chr8 (20-249)||(36630819-36631047)
chr8 (1-249)||(32066147-32066394)
chr8 (1-272)||(34388858-34389128)
chr8 (1-234)||(12898127-12898358)
chr8 (1-209)||(20138448-20138656)
chr8 (1-249)||(15821231-15821478)
chr8 (1-219)||(41893254-41893469)
chr8 (52-249)||(16457364-16457559)
chr8 (1-200)||(38577641-38577840)
chr8 (98-244)||(10248504-10248647)
chr8 (147-214)||(32945700-32945767)
chr8 (1-144)||(35816098-35816238)
chr8 (150-219)||(15906698-15906767)
chr8 (147-216)||(17656999-17657068)
chr8 (147-219)||(30236125-30236197)
chr8 (30-130)||(22773598-22773699)
chr8 (174-232)||(10552267-10552325)
chr8 (147-219)||(12198066-12198138)
chr8 (147-219)||(12442494-12442566)
chr8 (168-219)||(33967338-33967389)
chr8 (182-219)||(40531244-40531281)
[»] chr5 (21 HSPs)
chr5 (1-239)||(34378090-34378327)
chr5 (1-272)||(698319-698590)
chr5 (1-238)||(29087474-29087708)
chr5 (1-239)||(18593235-18593472)
chr5 (1-106)||(7161868-7161973)
chr5 (99-186)||(7162267-7162353)
chr5 (147-232)||(13954231-13954316)
chr5 (147-219)||(7195236-7195308)
chr5 (171-232)||(7392052-7392113)
chr5 (148-224)||(22675322-22675398)
chr5 (94-231)||(14302377-14302511)
chr5 (147-216)||(21402834-21402903)
chr5 (171-244)||(33258903-33258976)
chr5 (147-219)||(27713081-27713153)
chr5 (171-219)||(39184208-39184256)
chr5 (147-231)||(25992007-25992091)
chr5 (147-231)||(26045961-26046045)
chr5 (147-201)||(8297498-8297552)
chr5 (1-142)||(18313495-18313636)
chr5 (183-216)||(12046270-12046303)
chr5 (150-219)||(23426356-23426425)
[»] chr6 (16 HSPs)
chr6 (2-249)||(3117475-3117721)
chr6 (153-272)||(16510304-16510424)
chr6 (1-82)||(10541980-10542061)
chr6 (147-232)||(32935336-32935421)
chr6 (1-76)||(14663231-14663306)
chr6 (98-217)||(20701754-20701870)
chr6 (98-219)||(26215970-26216088)
chr6 (173-246)||(26534742-26534815)
chr6 (171-230)||(9224042-9224101)
chr6 (165-216)||(34105428-34105479)
chr6 (162-219)||(34092807-34092864)
chr6 (148-232)||(21266112-21266196)
chr6 (193-248)||(3880626-3880681)
chr6 (148-215)||(13423482-13423549)
chr6 (173-244)||(12794101-12794173)
chr6 (179-219)||(34090375-34090415)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-189)||(5747-5935)
[»] scaffold0068 (1 HSPs)
scaffold0068 (32-272)||(35655-35894)
[»] scaffold0200 (1 HSPs)
scaffold0200 (147-232)||(19382-19467)
[»] scaffold0119 (1 HSPs)
scaffold0119 (147-224)||(42135-42212)
[»] scaffold0063 (1 HSPs)
scaffold0063 (147-232)||(58126-58211)
[»] scaffold0050 (1 HSPs)
scaffold0050 (165-232)||(36706-36773)
[»] scaffold1613 (1 HSPs)
scaffold1613 (171-219)||(1038-1086)
[»] scaffold0620 (2 HSPs)
scaffold0620 (165-219)||(3842-3896)
scaffold0620 (162-219)||(8141-8198)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 387403 - 387132
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  387403 actattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 387304  T
Q  101 cttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  387303 cttccaaaacctcgtgacctccgatccaccaaaagagcacaaaaacaaaagctcaaaaaccaacttgagtcaaagaattgactcccgatctcaaatcaaa 387204  T
Q  201 agtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcccggtgtaccagagaaaaacc 272  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  387203 agtgatcagcccaccagactttagtaccaaattagcagggcacccctcgccccggtgtaccagagaaaaacc 387132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39338717 - 39338964
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||   ||||||||||||| || ||| || ||| |||    
T  39338717 actactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagcacctaaccgaaggatcattcag 39338816  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| ||||||||||| |   |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  39338817 ctatcacaaacctcgcgacctccgatccaccgaaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaa 39338914  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||| ||||||||||||||||  |||||||||||||||||| |||| ||||    
T  39338915 aagcgatcggcccaccagactatagtaccaaattagcagggcacccctcg 39338964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 10524329 - 10524079
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||| || ||| || |||||||    
T  10524329 actactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagccacatatcgaagagcacctaaccgaaggatcatgcag 10524230  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga----attgactcccgatcttgaa 195  Q
    || ||  ||||||||||||||||||  |||| ||||||||||| |   |||||||||||||||||||||||||||||    ||||||||||||||| |||    
T  10524229 ctatcacaaacctcgcgacctccga-acaccgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaatatattgactcccgatctcgaa 10524133  T
Q  196 tcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||||||||||||  ||| |||||||| ||||| |||||||||    
T  10524132 tcaaaagtgatcggcccaccagactatagcaccaaattggcagggcacctctcg 10524079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7874519 - 7874278
Alignment:
Q  1 actactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||  |||||||||||||||||||| | ||||| ||| ||| ||  |||||||| | |    
T  7874519 actactcacccc-aaagaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccaaatgaacaagta 7874422  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    | ||||| |||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  7874421 gtttccacaacctctcgacctccgatccaccgaatgagcacaaaa-caaaagcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaa 7874323  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||||| |||||||||| |||| ||||||| |||||| ||||    
T  7874322 aagtgatcgacccaccagactttagaaccaaatcagcagggcacc 7874278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 14106374 - 14106623
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||  |||||||||||||||||||| | ||| | ||| | | || |||||| ||| ||    
T  14106374 actactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacat-tcgtaaagctcttaaccgaatgatcataca 14106472  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaact-tgagtcaaagaattgactcccgatcttgaatca 198  Q
     |||||| |||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||   |||   |||||  ||||||||||||||||||||    
T  14106473 acttccacaacctctcgacctctgatccaccgaaagagcacaaaaacaaaaacccaaaaaccaaaactgatctaaagagctgactcccgatcttgaatca 14106572  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||||||||| |||| ||||||| |||||| |||| ||||    
T  14106573 aaagtgatcggcccaccagactttaggaccaaatcagcagggcacccctcg 14106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14405428 - 14405197
Alignment:
Q  1 actactcacccccaaa-gaaca-ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgc 98  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||  |||||||||||  ||||||| |  |||  ||| ||| ||  ||||||| |||    
T  14405428 actactcacccccaaaagaacatccctcaaaataaaactcccagacttcaacacccaagtcgagccacatg-cgacaagctcctaaccaaatgaacgtgc 14405330  T
Q  99 agcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    || ||||| |||| | |||| || |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||||| ||||||    
T  14405329 agtttccacaaccactcgacttctgatccaccgaaagagcacaaaa-caaaagcccaaaaaccaacttgagccaaagagctgactcccgatctcgaatca 14405231  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||||||||||||||||| |||| |||||||    
T  14405230 aaagtgatcggcccaccagactttagaaccaaat 14405197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 5254438 - 5254263
Alignment:
Q  47 caacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaac 146  Q
    |||||||||| ||||||||| | ||||| ||| ||  || |||||||||||||||||||| |||||| |||||||||||||||| ||| ||||| |||||    
T  5254438 caacacccaaactgagccacat-tcgaaaagctccaaaccgaatgaacatgcagcttccacaacctctcgacctccgatccaccgaaaaagcac-aaaac 5254341  T
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||||||| |||||||||||||  ||||||   ||||||||||||  ||| ||||||||||||||||| |||| ||||    
T  5254340 aaaagcccgaaaaccaacttgaaccaaagagcagactcccgatctcaaattaaaagtgatcggcccactagactttag 5254263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 17116733 - 17116923
Alignment:
Q  3 tactcacccccaaagaacaccctcaaaataaaa-ctcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagc 101  Q
    ||||||||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |  |||||||||||| || ||  || || | ||     
T  17116733 tactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgagccacattacgaagagcacctaaccgatggatcaagtaga 17116832  T
Q  102 t-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttga 194  Q
    | ||  |||||||||||||||| ||| | | ||| |||||||||   |||||| |||||||||| ||||||||| || |||||||| |||||||    
T  17116833 tatcacaaacctcgcgacctccaatctatcgaaaaagcacaaaa--caaagcctaaaaaccaacatgagtcaaa-aactgactcccaatcttga 17116923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 4472035 - 4471935
Alignment:
Q  116 gacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacc 215  Q
    |||||||| |||||||||||| ||| || |   |||||||||||| ||||||| |||||||| ||||||||||||| |||||||| | ||||||||||||    
T  4472035 gacctccggtccaccaaaagaacaccaata---aagcccaaaaacaaacttgaatcaaagaactgactcccgatctcgaatcaaaggcgatcggcccacc 4471939  T
Q  216 agac 219  Q
    ||||    
T  4471938 agac 4471935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 10173539 - 10173659
Alignment:
Q  109 acctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcg 208  Q
    ||||| ||||||||||| |||| ||||| ||| ||  ||||||||||||| | |||||||| |||| || | ||| ||||||| ||||||||||||||||    
T  10173539 acctctcgacctccgattcaccgaaagaacaccaa--caaaagcccaaaaccaaacttgagccaaataacttacttccgatctcgaatcaaaagtgatcg 10173636  T
Q  209 gcccaccagacgttagtaccaaa 231  Q
    |||||| |||| |||| ||||||    
T  10173637 gcccactagactttaggaccaaa 10173659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 1269567 - 1269490
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||| ||||||| | |||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  1269567 aaaatcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttag 1269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 22885111 - 22885202
Alignment:
Q  125 tccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| ||||| ||| |||||||   ||||||| | |||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  22885111 tccaccgaaagaacaccaaaacaa---cccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagac 22885202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 16960064 - 16959989
Alignment:
Q  149 aagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||||||||| | |||||||| ||||||| |||||| |||||| |||||||||| |||||||||||||||| ||||    
T  16960064 aagcccaaaaccaaacttgagccaaagaactgactctcgatctcgaatcaaaagcgatcggcccaccagactttag 16959989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7460905 - 7460839
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccac 66  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  7460905 actactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctgagccac 7460839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 37770580 - 37770723
Alignment:
Q  85 ctgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactc 184  Q
    ||||| || ||| |||||||||| ||||| ||||||||||| |||| |||||    ||  | |||||||||||| | || ||||   |||||||||||||    
T  37770580 ctgaaagatcattcagcttccaacacctctcgacctccgattcaccgaaaga----aaccataaaagcccaaaaccaaaattgatctaaagaattgactc 37770675  T
Q  185 ccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    | ||||  |||||||||||||||||||||||| || |||| |||||||    
T  37770676 ctgatccagaatcaaaagtgatcggcccaccaaaccttaggaccaaat 37770723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 2062973 - 2062900
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacg 220  Q
    |||||||||||| | |||||||| ||||||  ||||||||||||| ||||||||||  ||||||||||||||||    
T  2062973 aaaagcccaaaaccaaacttgagccaaagagctgactcccgatctcgaatcaaaagcaatcggcccaccagacg 2062900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 13337358 - 13337286
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||| |||||| | |||||||||||||||| ||||| ||||| | ||||||||||||||||||||| |||||    
T  13337358 aaaagtccaaaacctaacttgagtcaaagaactgacttccgatttcgaatcaaaagtgatcggcccatcagac 13337286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 15126407 - 15126479
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| | ||| |||| |||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  15126407 aaaagcccaaaaccaaacatgagccaaagaaccgactcccgatctcgaatcaaaaatgatcggcccaccagac 15126479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 16952236 - 16952443
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||||||||||| || |||| ||||||| || || ||||||| ||| ||| |||| |  |||| ||| |||  | ||| || | |  |    
T  16952236 actactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatc-cgaaaagctcctatccgaaagatcgttta 16952334  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    |||||||  ||||| | |||||||||||||| ||||| ||| |||  ||| | |||||| | |||||||| ||||||| || |||||||||| |||||||    
T  16952335 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaa--aaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaa 16952432  T
Q  200 aagtgatcggc 210  Q
    ||  |||||||    
T  16952433 aaaagatcggc 16952443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17022901 - 17023108
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||||||||||| || |||| ||||||| || || ||||||| ||| ||| |||| |  |||| ||| |||  | ||| || | |  |    
T  17022901 actactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatc-cgaaaagctcctatccgaaagatcgttta 17022999  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    |||||||  ||||| | |||||||||||||| ||||| ||| |||  ||| | |||||| | |||||||| ||||||| || |||||||||| |||||||    
T  17023000 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaa--aaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaa 17023097  T
Q  200 aagtgatcggc 210  Q
    ||  |||||||    
T  17023098 aaaagatcggc 17023108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17060207 - 17060414
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||||||||||| || |||| ||||||| || || ||||||| ||| ||| |||| |  |||| ||| |||  | ||| || | |  |    
T  17060207 actactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatc-cgaaaagctcctatccgaaagatcgttta 17060305  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    |||||||  ||||| | |||||||||||||| ||||| ||| |||  ||| | |||||| | |||||||| ||||||| || |||||||||| |||||||    
T  17060306 gcttccaccacctctcaacctccgatccaccgaaagaacaccaaa--aaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaa 17060403  T
Q  200 aagtgatcggc 210  Q
    ||  |||||||    
T  17060404 aaaagatcggc 17060414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 36276178 - 36276240
Alignment:
Q  156 aaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||| || | |||||||||||    
T  36276178 aaaacaaacttgagtcaaaga-ttgactcccgatctcgaatcaaaagcgaacagcccaccagac 36276240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 7696047 - 7695985
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcgg 209  Q
    |||||||||||| | |||||||| ||||||| ||||||||| | | |||||||||||||||||    
T  7696047 aaaagcccaaaacctaacttgagccaaagaactgactcccggtatcgaatcaaaagtgatcgg 7695985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 4162052 - 4162089
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4162052 ctcccgatctcgaatcaaaagtgatcggcccaccagac 4162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 23650444 - 23650384
Alignment:
Q  172 aaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||| ||||||||||||| |||||||||| |||| |||||||||||  ||| |||||||    
T  23650444 aaagaaatgactcccgatctcgaatcaaaagcgatcagcccaccagactctagaaccaaat 23650384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 27740027 - 27739987
Alignment:
Q  179 tgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  27740027 tgactctcgatcttgaatcaaaagcgatcggcccaccagac 27739987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 33788653 - 33788701
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| |||||||| |||| |||||||||| ||||||||||||||||    
T  33788653 caaagaactgactcccaatctcgaatcaaaagcgatcggcccaccagac 33788701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 18681151 - 18681080
Alignment:
Q  145 acaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||||||||| | |||||||  || |||| ||||||||||||| |||||||| |  ||||||||||||    
T  18681151 acaaaagcccaaaaccaaacttgaaccagagaactgactcccgatctcgaatcaaatgcaatcggcccacca 18681080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 17079281 - 17079190
Alignment:
Q  117 acctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggc 210  Q
    |||||||||||||| ||||| ||| |||  ||| | |||||| | |||||||| ||||||| || |||||||||| |||||||||  |||||||    
T  17079281 acctccgatccaccgaaagaacaccaaa--aaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaaaagatcggc 17079190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 34230285 - 34230219
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggccca 213  Q
    |||||||||||| | |||||||  ||||||| ||||||| ||||| |||| |||| |||||||||||    
T  34230285 aaaagcccaaaatcaaacttgatccaaagaactgactcctgatctcgaataaaaaatgatcggccca 34230219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19176733 - 19176489
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaat--gaacatgc 98  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||| |  ||||||||||||||| |||   || |||||    
T  19176733 actactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagccacattacgaagagcacctgaccgaaaaggatcatgc 19176634  T
Q  99 agcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  19176633 agcttccacaaccttgcgacctccgatccaccaaaagagcacaaat-caaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatca 19176535  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  19176534 aaagtgatcggcccaccagactttagaaccaaattagcagggcacc 19176489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 43012604 - 43012372
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| || ||||||     
T  43012604 actactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatttcgaagagcacctgaccgaacgatcatgcaa 43012505  T
Q  101 cttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaa 200  Q
    |||||| |||||||||||||| ||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  43012504 cttccacaacctcgcgacctctgattcaccgaaagagcac-aaaacaaaagctcaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaa 43012406  T
Q  201 agtgatcggcccaccagacgttagtaccaaatta 234  Q
    ||||||||| ||||||||| |||| |||||||||    
T  43012405 agtgatcgggccaccagactttagaaccaaatta 43012372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 20612011 - 20611741
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| || ||| || ||| |||    
T  20612011 actactcacccacaaagaacaccctcagaataaaactcctaga-cccaacacccaagctgagtcacatttcgaagagcacctaaccgaaggatcattcag 20611913  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||||||||||||||||||||| |||||||||  ||   ||||||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  20611912 ctatcacaaacctcgcgacctccgatccaccgaaagagcac--aacgcaaagcccaaaaaccaacttaagtcaaagaactgactcccgatctcgaatcaa 20611815  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    || ||||||||||| || ||  |||||| ||||||||||| |||| ||||  ||||||  ||||||||||||||    
T  20611814 aaatgatcggcccaacaaactatagtacgaaattagcagggcacccctcgcccccggtacaccagagaaaaacc 20611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 23328202 - 23328449
Alignment:
Q  1 actactcacccccaaagaacacc-ctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||  |||||||||||||||||||| | ||||| ||| ||| || ||||||||| | |    
T  23328202 actactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccgaatgaacaagga 23328300  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||| |  | ||||||||||| |||||||    
T  23328301 gcttccacaacctctcgacctccgatccaccgaaagagcacaaaa-caaaagctcaaaaaccaacttgagccaaaaagctaactcccgatctcgaatcaa 23328399  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||| |||||| || |||| ||||||| | |||| |||| ||||    
T  23328400 aagtgatcggtccaccaaactttagaaccaaatcaacagggcacccctcg 23328449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2392358 - 2392605
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||||||| | | ||||||  ||| || ||| || |||||||    
T  2392358 actactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcag 2392457  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||| || ||||||| ||||| || |||| |||||||    
T  2392458 ctagcacaaacctcgcgacctccgatccaccgaaagagcacaacac--aaagcccaaaaaccaacttaagacaaagaactgacttccaatctcgaatcaa 2392555  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||| ||||||| |  |||||||||||||||||| |||| ||||    
T  2392556 aagtgatcggtccaccaggctatagtaccaaattagcagggcacccctcg 2392605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 40023424 - 40023666
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||| ||| ||||||| ||| ||||||||||||||| ||||  |||||||| ||||||||||| | ||||| ||| ||| || |||||||||||||    
T  40023424 actactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacaccctagctgagccacat-tcgaaaagctcctaaccgaatgaacatgca 40023522  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| || |||| |||||||| ||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||| |||||||    
T  40023523 gcttccacaacctcccgtcctctgatccaccgaaagagcacaaaa-caaaagcccaaaaaccaacttaagccaaagaatcgactcccgatctcgaatcaa 40023621  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    |||||||||| ||||||||| |||  || |||| |||||| ||||    
T  40023622 aagtgatcggtccaccagactttaaaacaaaatcagcagggcacc 40023666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 9583918 - 9584147
Alignment:
Q  13 caaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacct 112  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||   ||||||||| |||||| ||| || | |||  |||| | |||||    
T  9583918 caaagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagccacaattcgaagagcgcctgaccgaaggatcgtgcgacttc-acaacct 9584016  T
Q  113 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggccc 212  Q
    ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||  ||    
T  9584017 cgcaacctccgatccaccgaaagatcacaaaa-caaaagcccaaaaaccatcttgagacaaagaactgactcccgatctcgaatcaaaagtgatcgatcc 9584115  T
Q  213 accagacgttagtaccaaattagcaggacacc 244  Q
    ||||||| |||||| |||||||||||| ||||    
T  9584116 accagactttagtatcaaattagcagggcacc 9584147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17551181 - 17550969
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||  ||||||||||||||||||||||||||  |||||||||||||||| ||||||||| | ||||||||||||| ||      | |||||||    
T  17551181 actactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttcgaagagcacctaacc-----atcatgcag 17551087  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||||||||||||||| || | ||||||||||| |   |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  17551086 ctatcacaaacctcgcgacctccgatgcatcgaaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaa 17550989  T
Q  200 aagtgatcggcccaccagac 219  Q
    ||||||||||||||||||||    
T  17550988 aagtgatcggcccaccagac 17550969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 45164072 - 45163835
Alignment:
Q  13 caaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacc 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| || ||| || ||||||||| ||  ||||     
T  45164072 caaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaact 45163973  T
Q  112 tcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcc 211  Q
    ||| ||||||||||||||| ||||||||||| |   ||||||||||||||||||| || |||| || ||||| | ||||| |||||||||||||||||||    
T  45163972 tcgtgacctccgatccaccgaaagagcacaaca--caaagcccaaaaaccaacttaagacaaaaaactgacttctgatctcgaatcaaaagtgatcggcc 45163875  T
Q  212 --caccagacgttagtaccaaattagcaggacacctctcg 249  Q
      ||| ||||  |||||||||||||||||| |||| ||||    
T  45163874 cacacaagactatagtaccaaattagcagggcacccctcg 45163835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 47235927 - 47235729
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| |||| | ||||||||||||| || ||| || |||||||    
T  47235927 actactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaaccacatttcgaagagcacctaaccgaaggatcatgcag 47235828  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||| ||||||||||  ||||| |||||| |||||||    
T  47235827 ctatcacaaacctcgcgacctctgatccaccgaaagagca-aaacac-aaagcccaaaaaccaacttaagtcaaagaaccgactctcgatctcgaatcaa 47235730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 34475608 - 34475875
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||| ||||  ||||||  | ||||||||||| |||||||| ||| | ||||||||||||| || ||| || ||| |||    
T  34475608 actactcacccacaaagaacacccttaaaa--aaactctcataccccaacacctaagctgagtcacatttcgaagagcacctaaccgaaggatcatacag 34475705  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||| ||||||| ||||||||||| |   |||||||||||| |||||| | || |||| |||||||||||||| |||||||    
T  34475706 ctatcacaaacctcgcgacctccaatccaccgaaagagcacaacac--aaagcccaaaaatcaacttaattccaagatttgactcccgatctcgaatcaa 34475803  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaa 270  Q
    ||||||||||||||||||||  ||| | |||||||||||| |||| ||||  ||||||  ||||||||||||    
T  34475804 aagtgatcggcccaccagactatagaaacaaattagcagggcacccctcgcccccggtacaccagagaaaaa 34475875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 45399025 - 45398778
Alignment:
Q  1 actactcacccccaaagaacaccct-caaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||||||| ||||||||  ||||||| |||||| | ||  ||||||| ||| || ||||| | ||||| ||| | | || |||||||||||||    
T  45399025 actactcacccccaacgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccacat-tcgaaaagctcataaccgaatgaacatgca 45398927  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| |||||||||||||| | |||||||| |||| ||||||||||||||||||||| | |||||||  |||||| |||||| |||||||    
T  45398926 gcttccacaacctctcgacctccgatccatcgaaagagcataaaa-caaaagcccaaaaaccaacttaaatcaaagagctgactctcgatctcgaatcaa 45398828  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||| ||||||||| |||   |||||| |||||| |||| ||||    
T  45398827 aagtgatcggtccaccagactttaaatccaaatcagcagggcacccctcg 45398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31483112 - 31482880
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||||| |||| ||||||||||||| |||| |||||||  | ||||||||||| |||||||||||| | ||||||||||||| || ||| || |||||||    
T  31483112 actactaacccacaaagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatttcgaagagcacctaaccgaaggatcatgcag 31483014  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||| ||||||| ||||||||||| |   |||||||||||| |||||| | |  |||| |||| ||||||||| |||||||    
T  31483013 ctatcacaaacctcgcgacctccaatccaccgaaagagcacaacac--aaagcccaaaaatcaacttaattttaagatttgattcccgatctcgaatcaa 31482916  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattag 235  Q
    |||||||| |||| ||||||  ||| ||||||||||    
T  31482915 aagtgatccgcccgccagactatagaaccaaattag 31482880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2394122 - 2394352
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||||||| | | ||||||  ||| || ||| || |||||||    
T  2394122 actactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcag 2394221  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| |                   ||||||||||||||| || ||||||| ||||| || |||| |||||||    
T  2394222 ctagcacaaacctcgcgacctccgatccaccga-------------------cccaaaaaccaacttaagacaaagaactgacttccaatctcgaatcaa 2394302  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||| ||||||| |  |||||||||||||||||| |||| ||||    
T  2394303 aagtgatcggtccaccaggctatagtaccaaattagcagggcacccctcg 2394352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 53248130 - 53247947
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaa-ctcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||| |||||||||| |||||||||||| |||  |||||||||||||||| ||||||||| | ||||||||||| | || ||| || ||| ||    
T  53248130 actactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgagccacatttcgaagagcacataaccgaaggatcataca 53248031  T
Q  100 gct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactc 184  Q
     || ||  |||||||||||||||| ||||||| ||||||||| || ||||||  | |||||||||||||| |||||||||||||||    
T  53248030 actatcacaaacctcgcgacctccaatccaccgaaagagcac-aacacaaaa-tctaaaaaccaacttgaatcaaagaattgactc 53247947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 14755286 - 14755339
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14755286 caaagaactgactcccgatcttgaatcaaaagtgatcggcccaccagactttag 14755339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 47945790 - 47945713
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||||||||||| | |||||||| |||| || ||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  47945790 aaaagcccaaaatcaaacttgagccaaataactgactcccgatctcgaatcaaaagtgatcggcccaccggactttag 47945713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 21342735 - 21342603
Alignment:
Q  29 aataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatcca 128  Q
    ||||||||||  ||||  |||||||||||  ||||||| | ||||| |||  || || ||||||||| |||||||||| |||||| ||||||| ||||||    
T  21342735 aataaaactctcagacttcaacacccaagtcgagccacat-tcgaaaagcttctaaccgaatgaacaagcagcttccacaacctctcgacctctgatcca 21342637  T
Q  129 ccaaaagagcacaaaaacaaaagcccaaaaaccaa 163  Q
     | ||||||||| |||||||||||| |||||||||    
T  21342636 tcgaaagagcac-aaaacaaaagcctaaaaaccaa 21342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 33143899 - 33144018
Alignment:
Q  98 cagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaa-cttgagtcaaagaattgactcccgatcttgaat 196  Q
    |||||||||  ||||||||||||| |||||||| |||||   || |||   |||||||||||| || |||||  ||||||| ||||||||||||| ||||    
T  33143899 cagcttccaccacctcgcgacctctgatccaccgaaagaaaccataaa---aagcccaaaaactaatcttgatccaaagaactgactcccgatctcgaat 33143995  T
Q  197 caaaagtgatcggcccaccagac 219  Q
    ||||||||||||  |||||||||    
T  33143996 caaaagtgatcgatccaccagac 33144018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30352293 - 30352356
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 66  Q
    |||||||| || ||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  30352293 actactcatccacaaagaacaccctaaaaa--aaactccgagaccccaacacccaagctgagccac 30352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 37123466 - 37123397
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||||||| | || ||||  ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  37123466 aaaagcccaaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagtgatcggcccacca 37123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 39021273 - 39021342
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||||||| |  ||||||  ||||||| |||||||||| || ||||||||||||||||||||||||    
T  39021273 aaaagcccaaaaccagacttgatccaaagaactgactcccgacctcgaatcaaaagtgatcggcccacca 39021342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 1652883 - 1652979
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacac 243  Q
    |||||||||||| | |||||||  ||||||| | ||||| ||||| |||||||||||||||||||||| |||  | || ||||||| || |||||||    
T  1652883 aaaagcccaaaaccaaacttgaaccaaagaactaactcctgatctcgaatcaaaagtgatcggcccacaagagttcaggaccaaatcagaaggacac 1652979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 14879486 - 14879442
Alignment:
Q  180 gactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  14879486 gactcccgatctcgaatcaaaagtgatcggcccaccagactttag 14879442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 14194009 - 14193939
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||| |||||||  ||||||| |||| ||||||||||||||||| || |||||| |||| |||||||    
T  14194009 aacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcggtccgccagactttaggaccaaat 14193939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 30127332 - 30127274
Alignment:
Q  162 aacttgagtcaa-agaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||||||    
T  30127332 aacttgagtcaagagaactgactcccgatctcgaatcaaaagcgatcggctcaccagac 30127274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 5556639 - 5556582
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||  ||||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  5556639 aacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgccccaccagac 5556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 20710740 - 20710777
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20710740 ctcccgatctcgaatcaaaagtgatcggcccaccagac 20710777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 2782081 - 2782138
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||| ||||||| || || ||||||||||  ||||||||||||||| ||||||||||    
T  2782081 aactttagtcaaaaaactggctcccgatctaaaatcaaaagtgatcgtcccaccagac 2782138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 30935387 - 30935456
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||| ||||| | |||||||  |||| || | |||||||||||||||||||||| |||| ||||||||    
T  30935387 aaaagctcaaaaccaaacttgaaccaaataactaactcccgatcttgaatcaaaagcgatcagcccacca 30935456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 823434 - 823498
Alignment:
Q  149 aagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggccca 213  Q
    ||||||||||   ||||||| | ||| || |||||| |||||| |||||||||||||||||||||    
T  823434 aagcccaaaacaaaacttgaatgaaacaactgactctcgatctcgaatcaaaagtgatcggccca 823498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 24099360 - 24099396
Alignment:
Q  183 tcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| | |||||||||||||||||||||||||||    
T  24099360 tcccgatatcgaatcaaaagtgatcggcccaccagac 24099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 31424304 - 31424248
Alignment:
Q  163 acttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| |||||| | ||||||||||||| |||||||||| || ||||| |||||||    
T  31424304 acttgaatcaaagcactgactcccgatctcgaatcaaaagcgaccggcctaccagac 31424248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 3867345 - 3867074
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||| ||||||||||||||||||  || || |||||||    
T  3867345 actactcacccccaaagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacatatcgaagagcacctgaccaaaggatcatgcag 3867246  T
Q  101 cttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaa 200  Q
     ||||| |||||||||||||| ||||||||  |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  3867245 tttccataacctcgcgacctctgatccaccgcaagagcac-aaagcaaaagcccaaaaaccaacttgagtcaaagaactgactcccggtctcgaatcaaa 3867147  T
Q  201 agtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcc-cggtgtaccagagaaaaacc 272  Q
    ||||||| |||||||| |  ||||||||||||||||||| ||||  ||| || ||||  ||||||||||||||    
T  3867146 agtgatcagcccaccatattttagtaccaaattagcaggccacccttcgccctcggtacaccagagaaaaacc 3867074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 5860140 - 5860387
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| || |||||||    
T  5860140 actactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaactgaaggatcatgcag 5860239  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||||||||||||||| ||||| ||||||||||| |   |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  5860240 ctatcacaaacctcgcgacctccgaaccaccgaaagagcacaaca--caaagcccaaaaaccaacttgcgtcaaagaattgactcccgatctcgaatcaa 5860337  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||| ||| |||||||| |||  |||||||||||||||||| |||| ||||    
T  5860338 aagcgataggcccaccggactatagtaccaaattagcagggcacccctcg 5860387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38306490 - 38306243
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| | || ||| || |||||||    
T  38306490 actactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggatcatgcag 38306391  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||| ||| | ||||||||||| |   |||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  38306390 ctatcacaaacctcgcgacctccgaaccatcgaaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccaatctcgaatcaa 38306293  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||||||||  |||||||||||||||||| |||| ||||    
T  38306292 aagtgatcggcccaccagactatagtaccaaattagcagggcacccctcg 38306243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 33435337 - 33435070
Alignment:
Q  2 ctactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagc 101  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| ||||||||||||||   |||||||||||||||| ||| || |||| |||    
T  33435337 ctactcacccccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagc 33435238  T
Q  102 ttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaa 201  Q
    || || ||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| |||||||| ||||||| ||||||||||||| |||||||||    
T  33435237 tttcacaacctcgcgacctccgatccaccgaaagagcac-aaaacaaatgcccacaaacgaacttgagacaaagaactgactcccgatctcgaatcaaaa 33435139  T
Q  202 gtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaa 269  Q
    ||||||| | |||||||| |||||||||||||| |||| |||| ||||  ||||||  |||||||||||    
T  33435138 gtgatcgtctcaccagactttagtaccaaattaacagggcacccctcgcccccggtacaccagagaaaa 33435070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 47325737 - 47326008
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| || ||| || ||| |||    
T  47325737 actactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcattcag 47325836  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||||||||||||||||||| | ||||||||||  |   |||||||||||||||||||||||||||||  |||||||||||||  ||||||    
T  47325837 ctatcacaaacctcgcgacctccgatccatcgaaagagcacagca--caaagcccaaaaaccaacttgagtcaaagagctgactcccgatctcaaatcaa 47325934  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    ||| ||||||||||||||||  |||||||||||||||| | |||| ||||  ||||||  ||||||||||||||    
T  47325935 aagcgatcggcccaccagactatagtaccaaattagcaaggcacccctcgcccccggtacaccagagaaaaacc 47326008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 41089607 - 41089836
Alignment:
Q  8 acccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaa 107  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||   ||||| ||   ||||||||||||| |  |||  | |||||||||||||     
T  41089607 acccgcaaagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacacttcgaagagcacctcaacgaagaatcatgcagcttccac 41089706  T
Q  108 aacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatc 207  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||||||||    
T  41089707 aacctcgcgacctccgatccaccgaaagatcacaaaa-caaaagctcaaaaaccaacttgagtcaaagagctgactcccaatctcgaatcaaaagtgatc 41089805  T
Q  208 ggcccaccagacgttagtaccaaattagcag 238  Q
    || ||||||||| ||||||||||||||||||    
T  41089806 ggtccaccagactttagtaccaaattagcag 41089836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34390191 - 34389954
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||||||| |||||||| | | ||| ||| ||| |  |||||||||||||    
T  34390191 actactcatccccaaagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacattt-gaaaagctcctaatcgaatgaacatgca 34390093  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||| || ||||||  ||||||||||||| |||||||    
T  34390092 gcttccacaacctctcgacctccgatccaccgaaagagcacaaaat-aaaagcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaa 34389994  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcagg 239  Q
    |||||||||||||||||||| |||  ||||||| ||||||    
T  34389993 aagtgatcggcccaccagactttaaaaccaaatcagcagg 34389954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 35745674 - 35745926
Alignment:
Q  1 actactcacccccaaagaacacc-ctcaaaataaaactcctagaccccaacacccaagctgagccacc---tatcgaagagcacctgactgaatgaacat 96  Q
    ||||||||||||||||||||||| |||||||||||||    ||||  ||||||||||||||||||||    ||||||| ||| ||| || ||||||||||    
T  35745674 actactcacccccaaagaacacctctcaaaataaaacagtcagacttcaacacccaagctgagccactatatatcgaaaagctcctaaccgaatgaacat 35745773  T
Q  97 gcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaat 196  Q
    |||||||||| |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||| ||||    
T  35745774 gcagcttccacaacctctccacctccaatccaccgaaagagcacaaaaacaaaagcccaaaaaccaacttgagccaaagagatgacttccgatctcgaat 35745873  T
Q  197 caaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||| ||||| ||||| |||| || ||||||| ||| |||| ||||    
T  35745874 caaaagtgatcagcccatcagactttagaacaaaattagtagggcacccctcg 35745926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 3419507 - 3419779
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||| | ||||||   |||||| |||||| || ||| || || ||||    
T  3419507 actactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaattcgaagcgcacctaaccgaaggatcaagcag 3419606  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||| | |||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  3419607 ctatcacaaaccttgtgacctctgatccaccgaaagagcacagaaacaaa-gcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaa 3419705  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    |||||||| |||||||| || |||||||||||||| |||| |||| ||||  |||||| |||||||||||||||    
T  3419706 aagtgatcagcccaccacactttagtaccaaattaacagggcacccctcgcccccggtataccagagaaaaacc 3419779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 37795206 - 37794971
Alignment:
Q  13 caaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacc 111  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||||   ||||||||||||| || ||| || |||||||||  || |||||    
T  37795206 caaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacc 37795107  T
Q  112 tcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcc 211  Q
    ||||||||||||| ||||| ||||||||||| |   ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||| |||||    
T  37795106 tcgcgacctccgaaccaccgaaagagcacaacac--aaagcccaaaaaccaacttgactcaaagaactgactcccgatctcgaatcaaaactgaacggcc 37795009  T
Q  212 caccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||| ||  || ||||||||||||||| |||| ||||    
T  37795008 caccatactatattaccaaattagcagggcacccctcg 37794971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10244411 - 10244140
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||||| ||||||| || ||||| ||| |||||| |||||||||||||||||||   || |||||||||| || ||| || ||||||     
T  10244411 actactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagccacaattcaaagagcacctaaccgaaggatcatgcaa 10244312  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||| ||||  ||||||||||| |   |||| |||||||| |||||||||||||||| ||||||||||||| |||||||    
T  10244311 ctatcacaaacctcgcgacctccgaaccactgaaagagcacaacac--aaaggccaaaaactaacttgagtcaaagaactgactcccgatctcgaatcaa 10244214  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctc-ggcccggtgtaccagagaaaaacc 272  Q
    |||||||||||||||||||   ||| |||||||||||||| |||| |||   ||||||  ||||||||||||||    
T  10244213 aagtgatcggcccaccagattatagcaccaaattagcagggcacccctctcccccggtacaccagagaaaaacc 10244140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 44353415 - 44353623
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaa-taaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | | ||| | ||||||||||||| || ||| || ||||||    
T  44353415 actactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgca 44353514  T
Q  100 gcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||  || |||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||| | |||||||||| |||||||||||||  |||||    
T  44353515 gctatcacaaacctcgcgacctccgatccaccgaaagagcacaacac--aaagcccaaaaaccaacataagtcaaagaactgactcccgatctcaaatca 44353612  T
Q  199 aaagtgatcgg 209  Q
    |||||||||||    
T  44353613 aaagtgatcgg 44353623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 6585046 - 6584891
Alignment:
Q  93 acatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatctt 192  Q
    |||||||| ||||| |||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||  |||||||||||||     
T  6585046 acatgcaggttccacaacctctcaacctccgatccaccgaaagagcacaaaa-caaaagcccaaaaaccaacttaagccaaagagctgactcccgatctc 6584948  T
Q  193 gaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||| |||| ||||    
T  6584947 gaatcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcg 6584891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25161040 - 25160773
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||| | ||||  ||||||  ||||||||||| | ||| |||||||| | || |||||||||| |||||| || ||  |||    
T  25161040 actactcacccacaaagaacacctttaaaa--aaactctcagaccccaacatctaagttgagccacatttccaagagcacctaactgaaggatcacacag 25160943  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||| | ||||||| ||||||| ||||||||||| |     ||||||||||||||||| | |  |||| |||||| ||||||| |||||||    
T  25160942 ctatcacaaaccttgagacctccaatccaccgaaagagcacaacac----agcccaaaaaccaacttaatttcaagatttgacttccgatctcgaatcaa 25160847  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcc-cggtgtaccagagaaaaacc 272  Q
    |||| ||||| |||||||||  ||| |||||||||||||| |||| |||| || ||||  ||||||||||||||    
T  25160846 aagtaatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaacc 25160773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31971986 - 31972089
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| || ||| || ||||||     
T  31971986 actactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcatgcac 31972085  T
Q  101 cttc 104  Q
    ||||    
T  31972086 cttc 31972089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 48161964 - 48162083
Alignment:
Q  88 aatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccg 187  Q
    |||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||| | |||    
T  48161964 aatgaacaagcaacttccacaacctctcgacctctgatccaccaaaagagcacaaaaacaaaagtccaaaaatcaatttgagccaaagaactgatttccg 48162063  T
Q  188 atcttgaatcaaaagtgatc 207  Q
    |||| ||||||||| |||||    
T  48162064 atctcgaatcaaaaatgatc 48162083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8745383 - 8745115
Alignment:
Q  1 actactcacccccaaagaaca----ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacat 96  Q
    ||||||||||||||||||| |    |||||||||| ||||||| || |   |||||| |||||||||||| |  |||| ||| |||  ||||| || |||    
T  8745383 actactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatc-cgaaaagctcctatctgaaagatcat 8745285  T
Q  97 gcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaat 196  Q
    |||||||||| |||||| |||||||||||||||| |||||   || |||   |||||||||| | |||||||  ||| ||| ||| ||||||||| ||||    
T  8745284 gcagcttccacaacctctcgacctccgatccaccgaaagaaaccataaa---aagcccaaaaccaaacttgatccaacgaactgaatcccgatctcgaat 8745188  T
Q  197 caaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcc-cggtgtaccagagaaa 268  Q
    ||||||||||||||||||||||  |||| ||||||| || ||| |||| |||  || ||||| ||||||||||    
T  8745187 caaaagtgatcggcccaccagaatttaggaccaaatcagaaggccacccctcaccctcggtgcaccagagaaa 8745115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 9349832 - 9349761
Alignment:
Q  148 aaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||| | |||||||  |  |||||||||||||||||| |||||||||||||||||||||||||||    
T  9349832 aaagcccaaaatcaaacttgaacctgagaattgactcccgatctcgaatcaaaagtgatcggcccaccagac 9349761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 1320863 - 1320793
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||  |||||||    
T  1320863 aacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggcccaccagactttatgaccaaat 1320793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 24324810 - 24324864
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  24324810 aacttgagccaaagaattgactcccgatctcgaatcaaaattgatcggcccacca 24324864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 42533264 - 42533334
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||| || ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||    
T  42533264 aacttaagccaaaggattgactcccgatctcgaatcaaaagtgatcagcccaccagactttaggaccaaat 42533334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 6716748 - 6716805
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  6716748 aacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggccaaccagac 6716805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 13311908 - 13311851
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  13311908 aacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagac 13311851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 3478471 - 3478352
Alignment:
Q  109 acctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcg 208  Q
    ||||| ||| |||||||||||| ||||| ||| || |   ||||||||||   | |||||| ||||||| | ||||||||||| ||||||||||||||||    
T  3478471 acctctcgatctccgatccaccgaaagaacaccaaca---aagcccaaaactaatcttgagccaaagaactaactcccgatctcgaatcaaaagtgatcg 3478375  T
Q  209 gcccaccagacgttagtaccaaa 231  Q
    |||||||| || |||| ||||||    
T  3478374 gcccaccaaactttaggaccaaa 3478352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 12480970 - 12480901
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    ||||||| |||| | |||||||  ||||||| ||||||||||||| |||||||||| |||||||||||||    
T  12480970 aaaagccaaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcggcccacca 12480901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 38485608 - 38485568
Alignment:
Q  179 tgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  38485608 tgactcccgatctcgaatcaaaagtgatcggcccaccagac 38485568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6585111 - 6585045
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccac 66  Q
    |||||||||| ||||| | ||||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  6585111 actactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacccaagctgagccac 6585045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 16828948 - 16829018
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||||||| |||||  |||||| ||| ||||||||||| ||| ||||||| |||| |||||||    
T  16828948 aacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcagccaaccagactttaggaccaaat 16829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 16954722 - 16954652
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||||||| |||||  |||||| ||| ||||||||||||| | ||||||| |||| |||||||    
T  16954722 aacttgagtcaaagaactgactttcgatctcgaaacaaaagtgatcggtcaaccagactttaggaccaaat 16954652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 23983285 - 23983207
Alignment:
Q  141 aaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||| |||| ||||||| | ||||||||  || ||||||||||||||||| |||||||||  ||||| ||||||||||    
T  23983285 aaaaaaaaaaacccaaaaccaaacttgagctaaggaattgactcccgatctcgaatcaaaaacgatcgacccaccagac 23983207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 46133274 - 46133360
Alignment:
Q  147 aaaagcccaaaaaccaa-cttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||||||||||||| |||||  || |||| |||||||||||||  ||||||||| ||||||| |||||||| | || |||||||    
T  46133274 aaaagcccaaaaaccaaacttgaaccagagaactgactcccgatctcaaatcaaaagcgatcggctcaccagacttcagcaccaaat 46133360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3419248 - 3419313
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 66  Q
    ||||||||| | |||| |||||||| ||||||||||||| | ||||||||||||||| | ||||||    
T  3419248 actactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaagttaagccac 3419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 46262151 - 46262188
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| |||||||||||||||||||||||||||    
T  46262151 ctcccgatctcgaatcaaaagtgatcggcccaccagac 46262188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 17802851 - 17802885
Alignment:
Q  185 ccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  17802851 ccgatctcgaatcaaaagtgatcggcccaccagac 17802885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 44755663 - 44755625
Alignment:
Q  194 aatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  44755663 aatcaaaagtgatcggcccaccagactttaggaccaaat 44755625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11379139 - 11379196
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||  ||||| | ||||||||||||| |||||||||| ||||||| ||||||||    
T  11379139 aacttgaaccaaagtactgactcccgatctcgaatcaaaagcgatcggctcaccagac 11379196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 27993568 - 27993605
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  27993568 ctcccgatctcgaatcaaaagtgatcggtccaccagac 27993605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 35206725 - 35206762
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| | |||||||||||||||||||||||||    
T  35206725 ctcccgatctcggatcaaaagtgatcggcccaccagac 35206762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 8255256 - 8254985
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||| |  |||||||||||| |||||  || || ||||    
T  8255256 actactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcag 8255157  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||| ||||| | ||||| | |||||    
T  8255156 ctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaac--aaagcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaa 8255059  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||  ||||||  ||||||||||||||    
T  8255058 aagtgatcggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaacc 8254985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 8268674 - 8268403
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||| |  |||||||||||| |||||  || || ||||    
T  8268674 actactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcag 8268575  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||| ||||| | ||||| | |||||    
T  8268574 ctatcacaaacctcgcgacctccgatccaccgaaagagcacaaaac--aaagcccaaaaaccaacttgagtcaaagaactgacttctgatctcggatcaa 8268477  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||  ||||||  ||||||||||||||    
T  8268476 aagtgatcggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaacc 8268403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 30964666 - 30964399
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||| ||  ||    |||||||| | ||||| | ||||||||||||| || |||||| |||||||    
T  30964666 actactcacccacaaagaacaccctcaaaataaaactcccagtacc----acccaagcagggccacatttcgaagagcacctaaccgaatgatcatgcag 30964571  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||  |||||||||||  |||||||    
T  30964570 ctatcacaaacctcgcgacctccgaaccaccaaaagagcacaaca-caaaa-cccaaaaaccaacttgagtcaaagaacggactcccgatcacgaatcaa 30964473  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcc-cggtgtaccagagaaaaacc 272  Q
    |||||||||||||| ||||   |||||||||||||||||| |||| |||| || ||||  ||||||||||||||    
T  30964472 aagtgatcggcccatcagattatagtaccaaattagcagggcacccctcgccctcggtacaccagagaaaaacc 30964399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 31050513 - 31050761
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||||||| |||||||| ||||||||||||  | ||||  ||||||||||||| ||||||  |||||| ||| ||| || |||||||||||||    
T  31050513 actactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacccaagcttagccaca-atcgaaaagctcctaaccgaatgaacatgca 31050611  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||  |  ||||||  | ||| ||||||| |||||||    
T  31050612 gcttccacaacctctcgacctccgatccactgaaagagcacaaaaacaaaagcccaaaaaccaactcaaaccaaagacctaacttccgatctcgaatcaa 31050711  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||||||||||||| |||| ||||||| || ||| |||| ||||    
T  31050712 aagtgatcggcccaccagactttagaaccaaatcagtagggcacccctcg 31050761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 4305951 - 4305712
Alignment:
Q  3 tactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct 102  Q
    ||||||||| |||||| |||||| ||||||||||||| | |||| || ||||||| |||||||| | ||||||||||||| || ||| || ||||||| |    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacat-tcgaagagcacctcaccgaaggatcatgcagtt 4305853  T
Q  103 tcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaa 201  Q
      || |||||| |||||||| |  ||||||||||||||||| |   |||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  4305852 atcacaaaccttgcgacctctggaccaccaaaagagcacaacac--aaagcctaaaaaccaacttgagacaaagaactaactcccgatctcgaatcaaaa 4305755  T
Q  202 gtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||    
T  4305754 gtgatcgccccaccagactatagtaccaaattagcagggcacc 4305712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2826011 - 2825776
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||| | ||||||||| ||||||||||||||| | ||  |||||||||| |||| |||||| ||||| ||| ||| || |||||||||||||    
T  2826011 actactcacccc-agagaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccacct-tcgaaaagctcctaaccgaatgaacatgca 2825914  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| ||||||  ||||||||||||||| |||||| ||||||  ||||||||||||||||  ||||| ||||||  ||| ||||||||| |||||||    
T  2825913 gcttccacaacctctagacctccgatccaccgaaagagtacaaaat-aaaagcccaaaaaccacattgagccaaagaggtgattcccgatctcgaatcaa 2825815  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcag 238  Q
    || ||||||||||||| ||| |||| ||||||| |||||    
T  2825814 aaatgatcggcccaccggactttagaaccaaatcagcag 2825776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 30167419 - 30167628
Alignment:
Q  4 actcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct- 102  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||||||| || ||||| | ||||||||| | | || ||| |  |||||||||     
T  30167419 actcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggccacatttcgaagagcgcttaaccgaagggtcatgcagcta 30167518  T
Q  103 tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaag 202  Q
    ||  |||||||||||||||||  ||||| ||||||||||| |   ||| |||||||| |||||||||||||||||  |||||||||||| ||||||||||    
T  30167519 tcataaacctcgcgacctccggaccaccgaaagagcacaaca--caaaccccaaaaatcaacttgagtcaaagaaccgactcccgatctcgaatcaaaag 30167616  T
Q  203 tgatcggcccac 214  Q
    |||||| |||||    
T  30167617 tgatcgacccac 30167628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 35341192 - 35341391
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||| | ||||||||| ||||||||||||||| | ||  ||||||| || ||||||||| | ||||| ||| | | ||||||||||||||||    
T  35341192 actactcacccc-agagaacacccctcaaaataaaactcccaaacttcaacaccaaa-ctgagccacat-tcgaaaagctcataactgaatgaacatgca 35341288  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| ||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||  ||||| ||||||| | |||||    
T  35341289 gcttccacaacctctcgaactccgatccaccgaaagagcac-aaaacaaaaggccaaaaaccaacttgagccaaagagctgacttccgatctcggatcaa 35341387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 25753285 - 25753171
Alignment:
Q  115 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccac 214  Q
    |||||||||||||||| |||||  |||| ||  ||||||||||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||    
T  25753285 cgacctccgatccaccgaaagaa-acaataa--aaagcccaaaatcaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgccccac 25753189  T
Q  215 cagacgttagtaccaaat 232  Q
    ||||| |||| |||||||    
T  25753188 cagactttaggaccaaat 25753171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8705996 - 8706061
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 66  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8705996 actacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacccaagctgagccac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 38637171 - 38637301
Alignment:
Q  85 ctgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactc 184  Q
    ||||| || ||| |||||||||  ||||| ||||||||||||||||||||||   || |||   |||||||||| || |||| || ||||||||||||||    
T  38637171 ctgaaagatcattcagcttccaccacctctcgacctccgatccaccaaaagaaaccataaa---aagcccaaaa-cctacttaagccaaagaattgactc 38637266  T
Q  185 ccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| |||||||||||||||||||| ||||||    
T  38637267 ccgatctcgaatcaaaagtgatcggcccgccagac 38637301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 22811157 - 22811242
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||| |||| | |||||||| ||||||| ||||||||||||| |||| |||| ||||||||||||||||| |||  |||||||    
T  22811157 aaaagcctaaaaccaaacttgagccaaagaactgactcccgatctcgaataaaaaatgatcggcccaccagactttaagaccaaat 22811242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 40813797 - 40813850
Alignment:
Q  166 tgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  40813797 tgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagac 40813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 53823418 - 53823503
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||| ||||||| | |||||||| ||||||| ||||||||||||| |||||||||||||| || ||||||||| |||  |||||||    
T  53823418 aaaaacccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgattggtccaccagactttatgaccaaat 53823503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 38929911 - 38929839
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| | |||||||| ||||||| ||||||  ||||| ||||||||||||||||||||| |||||    
T  38929911 aaaagcccaaaatcaaacttgagccaaagaactgactcttgatctcgaatcaaaagtgatcggcccagcagac 38929839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 39421038 - 39421080
Alignment:
Q  175 gaattgactcccgatcttgaatcaaaagtgatcggcccaccag 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  39421038 gaattgactcccgatctcgaatcaaaagtgatcggcccaccag 39421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 36962626 - 36962684
Alignment:
Q  160 ccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||| |||||||||||||||    
T  36962626 ccaacttgagtcaaagact-gactcctgatctcgaatcaaaagtaatcggcccaccagac 36962684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 39041285 - 39041343
Alignment:
Q  161 caacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||| |  || ||||||| ||||| |||||||||||||||||||||||||||    
T  39041285 caacttgagtctagaaactgactcctgatctcgaatcaaaagtgatcggcccaccagac 39041343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 46698784 - 46698854
Alignment:
Q  150 agcccaaaaaccaa-cttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||| || |||||  ||||||| ||||||||||||| ||||||||||  |||||||||||||||    
T  46698784 agcccaaaaacaaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcaatcggcccaccagac 46698854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 6599957 - 6600014
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||||||  ||||||||||||  ||||||||| ||||||||||||||||    
T  6599957 aacttgaatcaaagaaccgactcccgatctctaatcaaaagcgatcggcccaccagac 6600014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16501815 - 16501746
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||||||| | |||| ||  ||||||  ||||||||||||| |||||||||| |||||||||||||    
T  16501815 aaaagcccaaaaccaaactagaaccaaagagctgactcccgatctcgaatcaaaagcgatcggcccacca 16501746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 21387216 - 21387273
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| || ||||| ||||| ||||||| ||||||||||||||||| |||||||||    
T  21387216 aacttgaatcgaagaactgacttccgatctcgaatcaaaagtgatcggtccaccagac 21387273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 35800573 - 35800488
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||| | |||| || |||||||| ||||| ||||||| |||||||||| ||||||  |||||||| | || |||||||    
T  35800573 aaaagcccaaaaccaaactggaatcaaagaactgacttccgatctcgaatcaaaagcgatcggttcaccagacttcagaaccaaat 35800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 49747611 - 49747526
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||| ||||| | |||||||   |||||| |||||| ||||||  ||||||||||||||||| |||||||| |||| |||||||    
T  49747611 aaaagctcaaaaccaaacttgatcaaaagaactgactctcgatctcaaatcaaaagtgatcggctcaccagactttagaaccaaat 49747526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 28966951 - 28966879
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| | |||||||| ||||||| |||||||| |||| |||||||||  ||||| || |||||||    
T  28966951 aaaagcccaaaaccaaacttgagccaaagaactgactcccaatctcgaatcaaaaacgatcgccctaccagac 28966879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 2061734 - 2061812
Alignment:
Q  146 caaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    ||||||||||||| | ||  |||  ||||||| |||||| | |||| ||||||||||||||| ||||||||||| ||||    
T  2061734 caaaagcccaaaatcaaaactgatccaaagaactgactctcaatctcgaatcaaaagtgatcagcccaccagactttag 2061812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 53756802 - 53756768
Alignment:
Q  185 ccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  53756802 ccgatctcgaatcaaaagtgatcggcccaccagac 53756768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 2792286 - 2792335
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcc 211  Q
    ||||||||||||  || ||||| ||||||| |||||||||||||||||||    
T  2792286 aacttgagtcaagaaactgacttccgatctcgaatcaaaagtgatcggcc 2792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20464819 - 20464786
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaa 34  Q
    |||||||||||||||| |||||||||||||||||    
T  20464819 actactcacccccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 24740103 - 24740172
Alignment:
Q  150 agcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||| | || ||||  |||| || |||||||||||||||||| | ||| ||||||||||||||||    
T  24740103 agcccaaaaccaaatttgaaccaaataactgactcccgatcttgaattataagcgatcggcccaccagac 24740172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 37707392 - 37707424
Alignment:
Q  187 gatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||| |||||||||||||||||||||||||||    
T  37707392 gatctcgaatcaaaagtgatcggcccaccagac 37707424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 41117964 - 41118024
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatc 207  Q
    |||||||||||| | || ||||| ||||||| | ||| ||||||| |||||||||||||||    
T  41117964 aaaagcccaaaacctaatttgagccaaagaacttacttccgatctcgaatcaaaagtgatc 41118024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 41920686 - 41920411
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatg-----aaca 95  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |   ||||||||||| |||||| |     | ||    
T  41920686 actactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatgatgaagagcacctaactgaaggttaggatca 41920587  T
Q  96 tgcagcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttga 194  Q
    |||||||  || |||||||||||||||||||||||| ||||||||||| |   ||||||||||| |||||||||||||||||| ||||||||||||| ||    
T  41920586 tgcagctatcacaaacctcgcgacctccgatccaccgaaagagcacaacac--aaagcccaaaatccaacttgagtcaaagaactgactcccgatctcga 41920489  T
Q  195 atcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcccggtgtaccagagaaaaacc 272  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||| |||| ||| ||  ||||||||||||||    
T  41920488 atcaaaagtgatcggcccaccagactgtagtaccaaattagcagggcacccctcgccccagtacaccagagaaaaacc 41920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 24449782 - 24450053
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| || ||| || ||||||     
T  24449782 actactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagccgcatttcgaagagcacctaaccgaaggatcatgcaa 24449881  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||||||||||||||||||||||||||||||||| |   ||| ||||||||||||||| || ||||||| ||||| |||||||  ||||||    
T  24449882 ctatcacaaacctcgcgacctccgatccaccaaaagagcacaaca--caaatcccaaaaaccaacttaagacaaagaactgacttccgatctcaaatcaa 24449979  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    ||||||||||||||||| ||  |||||||||| ||||||| |||| ||||  ||||||  ||||||||||||||    
T  24449980 aagtgatcggcccaccaaactatagtaccaaaatagcagggcacccctcgcccccggtacaccagagaaaaacc 24450053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 5389287 - 5389542
Alignment:
Q  15 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 113  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | || ||| || |||| ||||  || |||||||    
T  5389287 aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggaccatgtagctaacacaaacctc 5389386  T
Q  114 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggccca 213  Q
    ||||||||||| ||||| ||||||||||| |   ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||     
T  5389387 gcgacctccgaaccaccgaaagagcacaacac--aaagcccaaaaacaaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggccct 5389484  T
Q  214 ccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaa 270  Q
     |||||  ||||||||||||||| || |||| ||||  ||||||  ||||||||||||    
T  5389485 tcagactatagtaccaaattagctgggcacccctcgcccccggtacaccagagaaaaa 5389542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31585611 - 31585854
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagacccc-aacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||||||| |||||| | ||||||||||||| ||  || || ||| ||    
T  31585611 actactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcataca 31585710  T
Q  100 gcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||  || |||||||||||||||||| ||||| ||| ||||||| |   |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  31585711 gctatcacaaacctcgcgacctccgacccaccgaaatagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatca 31585808  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||    
T  31585809 aaagtgatcggcccaccagactatagtaccaaattagcagggcacc 31585854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5459390 - 5459153
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||| | || |||||||||| |||||| || |||||||    
T  5459390 actactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatttcaaagagcacctaactgaaggatcatgcag 5459291  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||||| |||||||| ||||  ||||||||||| |   |||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  5459290 ctatcacaaacctcgcaacctccgaaccactgaaagagcacaacac--aaagcccaaaaatcaacttgaatcaaataattgactcccgatctcgaatcaa 5459193  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcagg 239  Q
    ||||||||||||||||||||  ||| ||||||||||||||    
T  5459192 aagtgatcggcccaccagactatagcaccaaattagcagg 5459153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 46692671 - 46692940
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||| | || | | ||  ||||||    
T  46692671 actactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacttaaccggaggataatgcag 46692770  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||| ||||| ||||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||| |||||||    
T  46692771 ctatcacaaacctcgcgacctccgaaccaccgaaagagcacaacac--aaagcccaaaaaccaacttgagccaaagaactaactcccgatctcgaatcaa 46692868  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaa 270  Q
    ||||||||||||||||||||  ||  |||||||||||||| |||||||||  ||||||  ||||||||||||    
T  46692869 aagtgatcggcccaccagactatatcaccaaattagcagggcacctctcgcccccggtacaccagagaaaaa 46692940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 7857882 - 7857635
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||  |||||||||| ||||||||| | || || ||| ||| || ||||| ||| |||    
T  7857882 actactcacccccatagaacacccctcaaaataaaactcccagacttcaacacccaaactgagccacatttcaaa-agctcctaaccgaatggacaagca 7857784  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| ||||| |||||||||| ||||||||||||| |||||| |||||||||||||| ||  ||||| |||||||||||||| |||||||    
T  7857783 gcttccacaacctctcgaccaccgatccaccgaaagagcacaaaa-caaaaggccaaaaaccaacttcagcaaaagagttgactcccgatctcgaatcaa 7857685  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||||||||||||| |||| ||||||| |||||| |||| ||||    
T  7857684 aagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcg 7857635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 24684370 - 24684598
Alignment:
Q  41 agaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcac 140  Q
    ||||||| ||| ||||| |||||||| | |||||||||||||||| ||| || |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  24684370 agaccccgacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcatcttccacaacctcgcgacctccgatccaccgaaagagcac 24684469  T
Q  141 aaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcagga 240  Q
     |||||||||||||||||||||||| ||||||||||| ||||  ||||||| |||| |||||||||||||||||||||| |||| | |||||||| |||     
T  24684470 -aaaacaaaagcccaaaaaccaactagagtcaaagaactgacatccgatctcgaattaaaagtgatcggcccaccagactttagaatcaaattagtaggg 24684568  T
Q  241 cacctctcg-gcccggtgtaccagagaaaa 269  Q
    |||| ||||  ||||||  |||||||||||    
T  24684569 cacccctcgcccccggtacaccagagaaaa 24684598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 24659157 - 24658916
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||   ||| |||| |||||||||| | ||||| |||  || || |||||||||||      
T  24659157 actactcacccccaaataacacccctcaaaataaaactcccagactt-aactcccaggctgagccacat-tcgaaaagcttctaaccgaatgaacatgat 24659060  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||| || ||||||  ||||||||||||| |||||||    
T  24659059 gcttccacaacctctcgacctccgatccaccgaaagagcacaaaaccaaa-gcccaaaaaccaacttcagccaaagagctgactcccgatctcgaatcaa 24658961  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||| |||||||||||| |||| ||||||| |||||| ||||    
T  24658960 aagtgattggcccaccagactttagaaccaaatcagcagggcacc 24658916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27031693 - 27031934
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||| | ||||||||| ||||||||||||||| ||||  ||||| |||| ||||||||| | ||||| ||| | | || |||||||||||||    
T  27031693 actactcacccc-agagaacacccctcaaaataaaactcccagacttcaacatccaaactgagccacat-tcgaaaagctcttaaccgaatgaacatgca 27031790  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||||||| |||||| | |||||||||||||| ||||||||||||| ||||| ||| |||||||||||||| ||||||  |||||| |||||| |||||||    
T  27031791 gcttccacaacctctcaacctccgatccaccgaaagagcacaaaa-caaaatccctaaaaccaacttgagccaaagagctgactctcgatctcgaatcaa 27031889  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||||||||||| |||| |||| ||||||| |||||| ||||    
T  27031890 aagtgatcggcccactagactttagaaccaaatcagcagggcacc 27031934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 272
Target Start/End: Original strand, 30685800 - 30686027
Alignment:
Q  45 cccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaa 143  Q
    |||||||||||||||||||||| |||| | |||||||| ||  || || |||||||||  || |||||||||||||||||| ||||| |||||||||||     
T  30685800 cccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaac 30685899  T
Q  144 aacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacac 243  Q
    |   ||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||||| ||||  |||||||||||||||||| |||    
T  30685900 ac--aaagcccaaaagccaacttgagtcaaagaactgactcccgatctcaaatcaaaagtgatcggcccacaagactatagtaccaaattagcagggcac 30685997  T
Q  244 ctctcggccc-ggtgtaccagagaaaaacc 272  Q
    | |||| ||| |||  ||||||||||||||    
T  30685998 ccctcgccccaggtacaccagagaaaaacc 30686027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 46814319 - 46814561
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||| ||||| ||||||| || |||||||||||| | ||  ||||||||| || ||||||| | ||||| ||| ||| |  |||||||| ||||    
T  46814319 actactcacctccaaataacacccctcgaaataaaactcccatacttcaacacccacgccgagccacat-tcgaaaagctcctaatcgaatgaacttgca 46814417  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    |||||   |||||| |||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||| |  ||||||||||||| |||||||    
T  46814418 gcttctgcaacctctcgacatccgatccaccgaaagagcacaaaa-caaaagccaaaaaaccaacttgagccaaaaagctgactcccgatctcgaatcaa 46814516  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    |||||||||||||||||||| |||| ||||||| |||||| ||||    
T  46814517 aagtgatcggcccaccagactttagaaccaaatcagcagggcacc 46814561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 20113523 - 20113620
Alignment:
Q  152 cccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||| ||| |||||| ||| ||||||||||||||||||| |||||| |||| |||||  || ||||||||||||||| |||| ||||    
T  20113523 cccaaaaaccaacttaagttaaagaactgattcccgatcttgaatcaaaaatgatcgtcccagcagactataataccaaattagcagggcacccctcg 20113620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 6764233 - 6764334
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||||||  | ||||| |||||||| | ||||||||||||| || ||| || |||||||    
T  6764233 actactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaaggaccatgcag 6764332  T
Q  101 ct 102  Q
    ||    
T  6764333 ct 6764334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 19598720 - 19598648
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||| ||||||| | |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||    
T  19598720 aaaaacccaaaatcaaacttgagtcaaagaactgactctcgatctcgaatcaaaagcgatcggcccaccagac 19598648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 6583237 - 6583298
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| |||||||    
T  6583237 caaagaattgactgccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaat 6583298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 27102275 - 27102210
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggccc 212  Q
    |||||||||||| | |||||||  ||||||| ||||||||||||| ||||||||||||||||||||    
T  27102275 aaaagcccaaaaccaaacttgatccaaagaactgactcccgatctcgaatcaaaagtgatcggccc 27102210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 32864558 - 32864643
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||| | ||||||||||||||||  |||| ||||||| |||| ||||||||| |||||||||| | |||| |||||||    
T  32864558 aaaagcccaaaaccaaacttgagtcaaagaaccgacttccgatctcgaattaaaagtgattggcccaccagcctttaggaccaaat 32864643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 17033655 - 17033585
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||  ||||||| ||||||||||||| || ||||||||||||||||||||||||  ||| |||||||    
T  17033655 aacttgaaccaaagaactgactcccgatctcgattcaaaagtgatcggcccaccagactataggaccaaat 17033585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 9313310 - 9313371
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||| |||| |||| |||||||    
T  9313310 caaagaactgactcccgatctcgaatcaaaagtgatcagcccactagactttaggaccaaat 9313371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 38544759 - 38544807
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  38544759 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagac 38544807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 34774955 - 34774870
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaat-tgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||||||||   |||||||| |||| ||  ||||||||||||| || |||||||||||||| |||||||||||||| |||||||    
T  34774955 aaaagcccaaaactaaacttgagccaaaaaaactgactcccgatctcga-tcaaaagtgatcggtccaccagacgttaggaccaaat 34774870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 15840924 - 15840981
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||  || ||||||||||||| ||||||||||||||| |||||||||||    
T  15840924 aacttgaatcaagaaactgactcccgatctcgaatcaaaagtgatcagcccaccagac 15840981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 22200069 - 22200020
Alignment:
Q  170 tcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| |||||||| |||||||||||||||||||||||| ||| |||||    
T  22200069 tcaaagcattgactctcgatcttgaatcaaaagtgatcggtccatcagac 22200020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 2877711 - 2877652
Alignment:
Q  156 aaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||| | |||||||||||||    
T  2877711 aaaaccaacttgagtcaaagactgg-ctcccaatcttgaatcaaatgcgatcggcccacca 2877652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 4651832 - 4651792
Alignment:
Q  179 tgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  4651832 tgactcccgatctcgaatcaaaagtgatcggccccccagac 4651792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 22239738 - 22239699
Alignment:
Q  170 tcaaagaattgactcccgatcttgaatcaaaagtgatcgg 209  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  22239738 tcaaagcattgactctcgatcttgaatcaaaagtgatcgg 22239699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16147639 - 16147570
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    ||||| |||||| | |||||||  ||||||| ||||||||||| ||||||||||| | |||| |||||||    
T  16147639 aaaagtccaaaatcaaacttgacccaaagaactgactcccgatattgaatcaaaattcatcgtcccacca 16147570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 10785456 - 10785524
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacc 215  Q
    |||||||||||| | |||||||| |||| || ||||||||||||| ||| ||||| | | |||||||||    
T  10785456 aaaagcccaaaaccaaacttgagccaaacaactgactcccgatctcgaagcaaaattaaccggcccacc 10785524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 30655612 - 30655572
Alignment:
Q  179 tgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||||| |||||||||| ||||||||||| ||||    
T  30655612 tgactcccgatctcgaatcaaaagcgatcggcccactagac 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 24995246 - 24995494
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagacccc-aacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||||||||||||| || ||| || ||||||    
T  24995246 actactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaaggatcatgca 24995345  T
Q  100 gcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||  || ||||||||||||||| || ||||  ||||||||||| |   |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  24995346 gctatcacaaacctcgcgacctctgacccactgaaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatca 24995443  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||||||||||||||  |||||||||||||||| |||||| ||||    
T  24995444 aaagtgatcggcccaccagactatagtaccaaattagcaagacacccctcg 24995494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 31207214 - 31207484
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||| || ||| |  ||| |||    
T  31207214 actactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagccacatttcgaagagcacctaaccgaagggtcattcag 31207313  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || |||||||||||||||||||||||| ||| ||||||| |   ||| ||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  31207314 ctatcacaaacctcgcgacctccgatccaccgaaaaagcacaacac--aaatcccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaa 31207411  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggccc-ggtgtaccagagaaaaacc 272  Q
    ||||||||||||||||||||  |||||||||||||||||| |||| |||| ||| |||  ||||||||||||||    
T  31207412 aagtgatcggcccaccagactatagtaccaaattagcagggcacc-ctcgcccctggtacaccagagaaaaacc 31207484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 9519729 - 9519457
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagacccc-aacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||  | ||||||||||||| || |||||| ||||||    
T  9519729 actactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaatgatcatgca 9519630  T
Q  100 gcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||  || |||| |||| |||||||| ||||| ||||||||||| |   |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  9519629 gctatcacaaacttcgcaacctccgacccaccgaaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatca 9519532  T
Q  199 aaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctc-ggcccggtgtaccagagaaaaacc 272  Q
    ||| |||||||||||| ||||  |||||||||||||||||| |||| |||   ||||||  ||||||||||||||    
T  9519531 aaactgatcggcccactagactatagtaccaaattagcagggcacccctcacccccggtacaccagagaaaaacc 9519457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 37986712 - 37986981
Alignment:
Q  3 tactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct 102  Q
    ||||||||| |||||||||||||| |||||||||||| |||||  ||||||||||||||||||| | ||||||||||||| || ||| || || ||||||    
T  37986712 tactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcaggcagct 37986811  T
Q  103 tcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaa 201  Q
      || |||||||||||||||||| ||||| ||||||||||| |   ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  37986812 atcacaaacctcgcgacctccgaaccaccgaaagagcacaacac--aaagcacaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaa 37986909  T
Q  202 gtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
     |||| ||||||||||||  ||  |||||||||||||| |||| ||||  ||||||  ||||||||||||||    
T  37986910 atgattggcccaccagactataacaccaaattagcagggcacccctcgcccccggtacaccagagaaaaacc 37986981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 36631047 - 36630819
Alignment:
Q  20 caccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacc 119  Q
    ||||| |||| |||||| |  ||||||| ||| ||||| |||||||| | |||||||||||||||| ||| || ||||||||| ||| ||||||||||||    
T  36631047 cacccccaaactaaaacacgcagacccccacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcagctcccacaacctcgcgacc 36630948  T
Q  120 tccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||| | ||||||||||||| ||||||||||||||| |||| ||||||||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  36630947 tccgatccatcgaaagagcacaaaa-caaaagcccaaaaacaaactagagtcaaagaactgacacccgatctcgaattaaaagtgatcggcccaccagac 36630849  T
Q  220 gttagtaccaaattagcaggacacctctcg 249  Q
     |||| |||||||||||||| |||| ||||    
T  36630848 tttagaaccaaattagcagggcacccctcg 36630819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32066147 - 32066394
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||| | |||||||||||||| |||||||||||  ||||||||||||||||||||| |||| | || ||||||| || || |||||| |||||||    
T  32066147 actactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttcaaagagcatctaaccgaatgatcatgcag 32066246  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||||| ||||| || ||||| ||||||||||| |   |||||||||||||||||| ||||||||||  ||||||||||| | |||||||    
T  32066247 ctatcacaaacctcgcaacctctgaaccaccgaaagagcacaacac--aaagcccaaaaaccaactggagtcaaagagctgactcccgatttcgaatcaa 32066344  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||||||||||||||||||||  ||| |||||||||||||| |||| ||||    
T  32066345 aagtgatcggcccaccagactatagcaccaaattagcagggcacccctcg 32066394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 34388858 - 34389128
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||||||| |   ||||| ||||| |||||| || ||   ||    
T  34388858 actactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaacacctaactgaaggatcact-ag 34388956  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||| |||||| ||||||||| ||| ||||||| |   |||||||||||||||||||||||||||||| ||||||  ||||| |||||||    
T  34388957 ctatcacaaacctcacgacctacgatccaccgaaatagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcttgatctcgaatcaa 34389054  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggccc-ggtgtaccagagaaaaacc 272  Q
    ||||||||||||||||||||  |||||||||||||||||| |||| |||| ||| |||  ||||||||||||||    
T  34389055 aagtgatcggcccaccagactatagtaccaaattagcagggcacccctcgcccctggtacaccagagaaaaacc 34389128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12898127 - 12898358
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||| || ||| || || ||||    
T  12898127 actactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatca-gcag 12898225  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||||||||||||||| ||| | ||||||||||| |   ||||||| ||||||||||||||| | | || ||||||| ||||| |||||||    
T  12898226 ctatcacaaacctcgcgacctccgaaccatcgaaagagcacaaca--caaagccccaaaaccaacttgagttagataactgactccggatctcgaatcaa 12898323  T
Q  200 aagtgatcggcccaccagacgttagtaccaaatta 234  Q
    ||||||||||  ||||||||  || ||||||||||    
T  12898324 aagtgatcgggtcaccagactatattaccaaatta 12898358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 20138656 - 20138448
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaa-taaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | | ||| | ||||||||||||| || ||| || ||||||    
T  20138656 actactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgca 20138557  T
Q  100 gcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||  || |||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||| | |||||||||| |||||||||||||  |||||    
T  20138556 gctatcacaaacctcgcgacctccgatccaccgaaagagcacaacac--aaagcccaaaaaccaacataagtcaaagaactgactcccgatctcaaatca 20138459  T
Q  199 aaagtgatcgg 209  Q
    |||||||||||    
T  20138458 aaagtgatcgg 20138448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15821231 - 15821478
Alignment:
Q  1 actactcacccccaaagaacac-cctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    ||||||||| || ||||||||| ||||||||||||||||| ||||  ||||| || ||||||||||| | ||||| ||| ||| ||  |||||||| |      
T  15821231 actactcactccaaaagaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacat-tcgaaaagctcctaaccaaatgaacaagtt 15821329  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    | ||||| |||||| ||||||| |||||||  ||||||||||||| ||||||||||||||||||| | |||||||||  ||||||||||||| |||||||    
T  15821330 gtttccacaacctctcgacctctgatccactgaaagagcacaaaa-caaaagcccaaaaaccaacataagtcaaagagctgactcccgatctcgaatcaa 15821428  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||| ||||||||||| |||| ||||||| |||||| |||| ||||    
T  15821429 aagtgatcagcccaccagactttagaaccaaatcagcagggcacccctcg 15821478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41893254 - 41893469
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||| |||||||||||||||||||| | |||||||| |||| |  ||| || |||||||    
T  41893254 actactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatttcgaagagtacct-atagaaggatcatgcag 41893352  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  |||||| ||||||||  | ||||||||||||||||| |   |||||||||||| ||||||||| ||||||| ||||||||||||| |||||||    
T  41893353 ctatcacaaaccttgcgacctcttaaccaccaaaagagcacaaca--caaagcccaaaaa-caacttgagacaaagaactgactcccgatctcgaatcaa 41893449  T
Q  200 aagtgatcggcccaccagac 219  Q
    ||||| | ||||||||||||    
T  41893450 aagtggttggcccaccagac 41893469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 249
Target Start/End: Original strand, 16457364 - 16457559
Alignment:
Q  52 cccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaa 150  Q
    ||||||||||||||| | || |||||||||| ||   | || |||||||||  || ||||||| |||| ||||| ||||| ||||||||||| |   |||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaaccaccgaaagagcacaacac--aaa 16457461  T
Q  151 gcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||  ||||| ||||||||||||||||| ||||    
T  16457462 gcctaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgg-ccaccaaactatagtatcaaattagcaggacacccctcg 16457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 38577641 - 38577840
Alignment:
Q  1 actactcacccccaaagaacac-cctcaaaataaaactcct-agaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgc 98  Q
    |||||||| ||||||||||||| || ||||||||||||||  ||||  ||||||||||| || ||||  | ||||| ||| ||  || ||||||||||||    
T  38577641 actactcatccccaaagaacactccacaaaataaaactccccagacttcaacacccaagttgcgccatat-tcgaaaagctccaaaccgaatgaacatgc 38577739  T
Q  99 agcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatca 198  Q
    |||||||| || ||| ||||||| |||||||| ||||||||| |||||||||| |||||||||||||| |  ||||||| | ||||||||||| ||||||    
T  38577740 agcttccacaaactctcgacctctgatccaccgaaagagcac-aaaacaaaagtccaaaaaccaacttaaaccaaagaactaactcccgatctcgaatca 38577838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 10248504 - 10248647
Alignment:
Q  98 cagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatc 197  Q
    |||||||||  |||||||| |||||||||||||||||||   || | |   ||||  |||| | |||||||| ||||||| |||||||||||||||||||    
T  10248504 cagcttccaccacctcgcggcctccgatccaccaaaagaaaccatata---aagcaaaaaaccaaacttgagccaaagaactgactcccgatcttgaatc 10248600  T
Q  198 aaaagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    |||||||||||| |||||| |  |||| || ||||||| ||||||||    
T  10248601 aaaagtgatcggtccaccaaattttaggacaaaattagaaggacacc 10248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 32945700 - 32945767
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccac 214  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||    
T  32945700 aaaagcccaaaaccaaacttgaatcaaagaattgactcccgatctcgaatcaaaagtgatcagcccac 32945767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35816098 - 35816238
Alignment:
Q  1 actactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgca 99  Q
    |||||||||||||||||||||||| ||||||   |||||   |||  ||||| |||| ||||||||| | ||||| | | | | || |||||||||||||    
T  35816098 actactcacccccaaagaacacccctcaaaa---aactctctgacttcaacatccaaactgagccacat-tcgaaaaactcttaaccgaatgaacatgca 35816193  T
Q  100 gcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaa 144  Q
    ||||||| || ||| | ||||||||||||||||||||||||||||    
T  35816194 gcttccacaatctctcaacctccgatccaccaaaagagcacaaaa 35816238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 15906767 - 15906698
Alignment:
Q  150 agcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||| | |||||||  ||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  15906767 agcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaatgtgatcggcccaccagac 15906698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 17656999 - 17657068
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    ||||| |||||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||    
T  17656999 aaaagtccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgacccacca 17657068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 30236125 - 30236197
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| | |||||||  ||||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  30236125 aaaagcccaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcgtcccaccagac 30236197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 22773699 - 22773598
Alignment:
Q  30 ataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcgacctccgatcca 128  Q
    |||||||||| |||||||||||||||| ||||||||| | ||||||||||||| || ||| || |||| || | ||  |||||||| ||||||| |||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctccaatcca 22773600  T
Q  129 cc 130  Q
    ||    
T  22773599 cc 22773598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 10552325 - 10552267
Alignment:
Q  174 agaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||| | || |||||||    
T  10552325 agaactgactcccgatctagaatcaaaagcgatcggcccaccagacttcagaaccaaat 10552267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 12198066 - 12198138
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| ||||| | |||||||| ||||||| |||||||| || || ||| |||||||||||| |||||||||    
T  12198066 aaaagctcaaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccaccagac 12198138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 12442494 - 12442566
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||| ||||| | |||||||| ||||||| |||||||| || || ||| |||||||||||| |||||||||    
T  12442494 aaaagctcaaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccaccagac 12442566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 33967389 - 33967338
Alignment:
Q  168 agtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| | ||| |||| ||||| |||||||||||||||||||||||||||    
T  33967389 agtcaaaaagttggctcctgatctcgaatcaaaagtgatcggcccaccagac 33967338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 40531281 - 40531244
Alignment:
Q  182 ctcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  40531281 ctcccgatctcgaatcaaaagtgatcggcccatcagac 40531244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34378327 - 34378090
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||||||| |  ||||||||| || || ||| || ||  ||     
T  34378327 actactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacattacgaagagcatctaaccgaaggatcaaacaa 34378228  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||||||||||||| |||||| |||||||||||||   |||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  34378227 ctatcacaaacctcgcgacctccggtccaccgaaagagcacaaaac--aaagcccaaaaaccaacttgtgtcaaagaactgactcccgatctcgaatcaa 34378130  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcagg 239  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  34378129 aagtgatcggcccaccagactttagtaccaaattagcagg 34378090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 698590 - 698319
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||| | || |||||||||| || ||| ||  ||||||    
T  698590 actactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaagagcacctaaccgaaggattatgcag 698491  T
Q  101 cttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    ||  || ||||||||| ||||| || ||||  |||||| |||| |   ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  698490 ctatcacaaacctcgcaacctctgaaccacagaaagagtacaacac--aaagcccaaaaaccaacttgagtcaaagagttgactcccgatctcgaatcaa 698393  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    ||| |||||| |||||||||  ||| |||||||||||||| |||| ||||  ||||||  ||||||||||||||    
T  698392 aagagatcggtccaccagactatagcaccaaattagcagggcacccctcgcccccggtacaccagagaaaaacc 698319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29087708 - 29087474
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||||||||||| |||||| |||||||||||||| |||| ||||||||||| | ||| |||||||| || |||||||||||||||  || || |||| ||    
T  29087708 actactcacccctaaagaa-accctcaaaataaagctcccagaccccaacatctaagttgagccacata-cgaagagcacctgaccaaaggatcatggag 29087611  T
Q  101 cttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaa 200  Q
    || ||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||| |||||||| ||||||| ||||| ||||||||    
T  29087610 ctaccataacctcgcgacctccgatccaccgaaagagcacaaaa-caaaagcccagaaaccaatttgattcaaagaactgactcctgatctcgaatcaaa 29087512  T
Q  201 agtgatcggcccaccagacgttagtaccaaattagcag 238  Q
    || |||| | ||||||||| |||| |||||| ||||||    
T  29087511 agggatcagtccaccagactttagaaccaaaatagcag 29087474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18593472 - 18593235
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| |||||||| | ||||||| ||||| || ||| || ||||||     
T  18593472 actactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagccacatttcgaagaacacctaaccgaaggatcatgcac 18593373  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaa 199  Q
    || ||  ||| |||||||||||||| ||||| ||||||||||| |    ||||||||||||||||||||||||||||| | ||||||||||| |||||||    
T  18593372 ctatcacaaatctcgcgacctccgaaccaccgaaagagcacaaca--ctaagcccaaaaaccaacttgagtcaaagaactaactcccgatctcgaatcaa 18593275  T
Q  200 aagtgatcggcccaccagacgttagtaccaaattagcagg 239  Q
    |||||||| |||||| | ||  ||| ||||||||||||||    
T  18593274 aagtgatctgcccactaaactatagcaccaaattagcagg 18593235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 7161868 - 7161973
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||  || || |||||||    
T  7161868 actactcacccccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagaacacctgaccaaaggatcatgcag 7161967  T
Q  101 cttcca 106  Q
    ||||||    
T  7161968 cttcca 7161973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 7162267 - 7162353
Alignment:
Q  99 agcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactccc 186  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  7162267 agcttccataacctcgcgacctccgatccatcgaaagagcacaaaa-caaaaacccaaaaaccaacttgagtcaaagaactgactccc 7162353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 13954231 - 13954316
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||| | |||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  13954231 aaaagcccaaaaccaaacttgagccaaagtaatgactcccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaat 13954316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 7195236 - 7195308
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||  | |||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  7195236 aaaagcccaaactctaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggctcaccagac 7195308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 7392052 - 7392113
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||    
T  7392052 caaagaactgactcccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaat 7392113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 22675322 - 22675398
Alignment:
Q  148 aaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    ||||||||||| | |||||||| ||||||| ||||||||||||| |||||||||  |||||| ||||||||| ||||    
T  22675322 aaagcccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaatcgatcggtccaccagactttag 22675398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 14302377 - 14302511
Alignment:
Q  94 catgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttg 193  Q
    |||||||||||||  ||||| |||||||||||||||| |||||   || |||   |||||||||| | ||||||   ||||||| |||||||| |||| |    
T  14302377 catgcagcttccaccacctctcgacctccgatccaccgaaagaaaccataaa---aagcccaaaaccaaacttgctccaaagaactgactcccaatctcg 14302473  T
Q  194 aatcaaaagtgatcggcccaccagacgttagtaccaaa 231  Q
    || ||||||||||| | ||||||||| |||| ||||||    
T  14302474 aaccaaaagtgatcagtccaccagactttaggaccaaa 14302511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 21402834 - 21402903
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||| ||||| | ||| |||||||||||| ||||||||||||| |||  |||||||||||||||||||    
T  21402834 aaaagctcaaaaccaaacctgagtcaaagaactgactcccgatctcgaactaaaagtgatcggcccacca 21402903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 33258903 - 33258976
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||||| | ||||| ||||| ||||||||||||||||||||||||||| |||| ||||||  || ||||||||    
T  33258903 caaagaactaactcctgatctcgaatcaaaagtgatcggcccaccagactttagcaccaaaacagaaggacacc 33258976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 27713153 - 27713081
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||||| | |||||||| ||||||| ||| ||||||||| |||||||||  ||||||||||| ||||    
T  27713153 aaaagcccaaaaccaaacttgagccaaagaactgattcccgatctcgaatcaaaaacgatcggcccactagac 27713081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 39184208 - 39184256
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  39184208 caaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagac 39184256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 25992091 - 25992007
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaa 231  Q
    |||||||||||| | | || |||  |||||| |||||| |||||| |||||||||| ||| |||||||||||| |||| ||||||    
T  25992091 aaaagcccaaaaccaacctcgagctaaagaactgactctcgatctcgaatcaaaagcgattggcccaccagactttagcaccaaa 25992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 26045961 - 26046045
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaa 231  Q
    ||||| |||||| | |||||||| ||||  | | ||||||||||| |||||||||||||||||  |||||||| |||| ||||||    
T  26045961 aaaagtccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagtgatcggttcaccagactttaggaccaaa 26046045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 8297552 - 8297498
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaa 201  Q
    ||||| |||||| | |||||||| ||||||| ||||||||||||| |||||||||    
T  8297552 aaaagtccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaa 8297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 18313495 - 18313636
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    |||||||||||   ||||||||||| || | |||||||| | | || || |||||| || |||||| | ||||||||||||| |  |||||| |||||||    
T  18313495 actactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaaaacccaaactaagccacatttcgaagagcacctaaacgaatgatcatgcag 18313593  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaa 142  Q
    || ||  |||||||||||||| | ||||||| |||||| ||||    
T  18313594 ctatcacaaacctcgcgaccttcaatccaccgaaagagtacaa 18313636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 12046303 - 12046270
Alignment:
Q  183 tcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    ||||||||| ||||||||||||||||||||||||    
T  12046303 tcccgatctcgaatcaaaagtgatcggcccacca 12046270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 23426425 - 23426356
Alignment:
Q  150 agcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||| | || |||| || ||||| |||||||| |||| |||||||||||| |||| |||||||||    
T  23426425 agcccaaaaccaaaattgattcgaagaactgactcccaatctcgaatcaaaagtgttcggtccaccagac 23426356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 3117721 - 3117475
Alignment:
Q  2 ctactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagc 101  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||| |||||||| | ||||||||||| | |  ||| || |||||| |    
T  3117721 ctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagccacatttcgaagagcacataatcgaaggatcatgcaac 3117622  T
Q  102 ttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaa 200  Q
    |  || |||||||||||||||||| ||||  ||||||||||| |   |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3117621 tatcacaaacctcgcgacctccgaaccacataaagagcacaacac--aaagcccaaaaaccaacttgagtcaaagaactgactcccgatcttgaatcaaa 3117524  T
Q  201 agtgatcggcccaccagacgttagtaccaaattagcaggacacctctcg 249  Q
    |||||||||||||||| ||  ||  | |||||||||||| |||| ||||    
T  3117523 agtgatcggcccaccatactatatcaacaaattagcagggcacccctcg 3117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 16510304 - 16510424
Alignment:
Q  153 ccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctcggcc 252  Q
    |||||||||||||||||| |||||| |||||| | |||| |||||||||||||||||||||| |||| |||| |||||||||||||| |||| || | ||    
T  16510304 ccaaaaaccaacttgagtaaaagaactgactctcaatctcgaatcaaaagtgatcggcccactagactttagaaccaaattagcagggcaccccttgccc 16510403  T
Q  253 -cggtgtaccagagaaaaacc 272  Q
     ||||  ||||||||||||||    
T  16510404 tcggtacaccagagaaaaacc 16510424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10542061 - 10541980
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacct 82  Q
    ||||||||||| ||||||| |||||| |||||||||| | |||||||||||||||||||||||||| | |||||||||||||    
T  10542061 actactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacct 10541980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 32935336 - 32935421
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||| |||||| | |||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||| | || |||||||    
T  32935336 aaaagtccaaaatcaaacttgagtccaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagacttcaggaccaaat 32935421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14663306 - 14663231
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaaga 76  Q
    ||||||||||| ||||||||| ||||||||||||||||| | ||||||||| |||||| ||||||| | |||||||    
T  14663306 actactcacccgcaaagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagccacatttcgaaga 14663231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 20701754 - 20701870
Alignment:
Q  98 cagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatc 197  Q
    |||||||||  ||||| |||||||||||||||| |||||   || |||   |||||||||| | ||||| || ||||||| | ||||||||||| |||||    
T  20701754 cagcttccactacctctcgacctccgatccaccgaaagaaaccataaa---aagcccaaaaccaaacttaagccaaagaactaactcccgatctcgaatc 20701850  T
Q  198 aaaagtgatcggcccaccag 217  Q
    ||||||||||||| ||||||    
T  20701851 aaaagtgatcggcacaccag 20701870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 26215970 - 26216088
Alignment:
Q  98 cagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatc 197  Q
    |||||||||  ||| ||| | ||||| |||||||||||| ||| ||||   |||||||||| | ||  |||  | ||||| ||||||||||||| |||||    
T  26215970 cagcttccaccaccgcgcaatctccggtccaccaaaagaacaccaaaa---aagcccaaaaccaaaactgaaccgaagaactgactcccgatctcgaatc 26216066  T
Q  198 aaaagtgatcggcccaccagac 219  Q
    ||||||||||||||||||||||    
T  26216067 aaaagtgatcggcccaccagac 26216088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 26534742 - 26534815
Alignment:
Q  173 aagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctc 246  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||| | || ||||||| || ||| ||||||    
T  26534742 aagaactgactcccaatctcgaatcaaaagtgatcggcccaccagacttcaggaccaaatcagaaggccacctc 26534815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 9224101 - 9224042
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaa 230  Q
    ||||||| ||||||||||||| |||||||||| |||| ||||||||||| |||| |||||    
T  9224101 caaagaactgactcccgatctcgaatcaaaagcgatcagcccaccagactttaggaccaa 9224042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 34105479 - 34105428
Alignment:
Q  165 ttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacca 216  Q
    |||||||||  || ||||||||||||| ||||||||||||||||||||||||    
T  34105479 ttgagtcaagaaactgactcccgatctcgaatcaaaagtgatcggcccacca 34105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 34092864 - 34092807
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||||||| |||| || |||| |||||||||||||||||| ||||||||    
T  34092864 aacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagac 34092807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 21266196 - 21266112
Alignment:
Q  148 aaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||||||| | |||||||  || | || | ||||||||||| |||||||||| |||||||||||||| | |||| |||||||    
T  21266196 aaagcccaaaaccaaacttgaaccacataactaactcccgatctcgaatcaaaagcgatcggcccaccagtctttaggaccaaat 21266112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 3880626 - 3880681
Alignment:
Q  193 gaatcaaaagtgatcggcccaccagacgttagtaccaaattagcaggacacctctc 248  Q
    |||||||||||||||||||||||| || |||| ||||||| || ||| ||||||||    
T  3880626 gaatcaaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctctc 3880681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 13423549 - 13423482
Alignment:
Q  148 aaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccacc 215  Q
    |||||||| || | |||||||| |||||||  ||||| |||||| ||||||||||||||||| |||||    
T  13423549 aaagcccataaccaaacttgagccaaagaaccgactctcgatctcgaatcaaaagtgatcggtccacc 13423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 12794173 - 12794101
Alignment:
Q  173 aagaattgactcccgatcttgaatcaaaag-tgatcggcccaccagacgttagtaccaaattagcaggacacc 244  Q
    ||||| ||||||| ||||| |||||||||| |||||||||||| |||| |||| ||||||  || ||||||||    
T  12794173 aagaactgactcctgatctcgaatcaaaagttgatcggcccactagactttagaaccaaaacagaaggacacc 12794101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 34090415 - 34090375
Alignment:
Q  179 tgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||||||||| ||||||||| |||||| ||||||||||    
T  34090415 tgactcccgatctcgaatcaaaattgatcgacccaccagac 34090375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 5935 - 5747
Alignment:
Q  1 actactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcag 100  Q
    ||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |  |||||||||||| || ||| || || | ||    
T  5935 actactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagccacattacgaagagcacctaaccgaaggatcaagtag 5836  T
Q  101 ct-tccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgat 189  Q
    || ||  |||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  5835 ctatcacaaaccttgcgacctccgatctaccgaaagagcacaaaaac-aaagcccaaaaaccaacctgagtcaaagaactgactcccgat 5747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 35655 - 35894
Alignment:
Q  32 aaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccgatccacc 130  Q
    |||||||| | |||||||||||||||||||||| | | ||||||||||||| || ||  || |||||||||  || ||| |||| |||||||||||||||    
T  35655 aaaactcccacaccccaacacccaagctgagcctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcgtgacctccgatccacc 35754  T
Q  131 aaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaa 230  Q
     ||||||||||| |   ||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||  ||  |||||    
T  35755 gaaagagcacaacat--aaagcccaaaaaccaacttaagtcaaagaat-gactcccgatctcgaatcaaaagtgatcggcccactagactatataaccaa 35851  T
Q  231 attagcaggacacctctcg-gcccggtgtaccagagaaaaacc 272  Q
    ||||||  | |||| ||||  ||||||  ||||||||||||||    
T  35852 attagctaggcacccctcgcccccggtacaccagagaaaaacc 35894  T

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Target: scaffold0200 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 19467 - 19382
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    |||||||||||| | |||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  19467 aaaagcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaat 19382  T

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Target: scaffold0119 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 42135 - 42212
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttag 224  Q
    |||| ||||||| | |||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  42135 aaaatcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttag 42212  T

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Target: scaffold0063 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 58211 - 58126
Alignment:
Q  147 aaaagcccaaaaaccaacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||||| |||| | |||||||  |||| |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||    
T  58211 aaaagcctaaaaccaaacttgatccaaacaattgacttccgatcttgaatcaaaagtgatcggcccaccaaactttaggaccaaat 58126  T

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Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 36773 - 36706
Alignment:
Q  165 ttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagacgttagtaccaaat 232  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||    
T  36773 ttgagacaaagaactgactcccgatctcgaatcaaaagtgatcagcccgccagactttaggaccaaat 36706  T

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Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 1038 - 1086
Alignment:
Q  171 caaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  1038 caaagaactgactcccgatctcgaatcaaaagcgatcggcccaccagac 1086  T

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Target: scaffold0620 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 3896 - 3842
Alignment:
Q  165 ttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    |||||||||  || ||||||||||||| ||||||||| |||||||||||||||||    
T  3896 ttgagtcaagaaactgactcccgatctcgaatcaaaattgatcggcccaccagac 3842  T

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Target: scaffold0620; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 8198 - 8141
Alignment:
Q  162 aacttgagtcaaagaattgactcccgatcttgaatcaaaagtgatcggcccaccagac 219  Q
    ||||||| ||||||||| |||| || |||| |||||||||||||||||| ||||||||    
T  8198 aacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagac 8141  T

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