View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_high_4 (Length: 412)
Name: NF7719_high_4
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 13213710 - 13214067
Alignment:
| Q |
19 |
agaatttgggtttactttgttttttgttgggttagggttaggtccaaggaatcggatcgatgatgggtttgatattggtaagaaagacagcgtgcgcatg |
118 |
Q |
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| T |
13213710 |
agaatttgggtttactttgttttttgttgggttagggttaggtccaaggaatcggatcgatgatgggtttgatattggtaagaaagacagcgtgcgcatg |
13213809 |
T |
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| Q |
119 |
ggcggtgttgtgggacctacaaagtgggtcccatttattcaagactactaccatgcttgaaatttctctctc-cttataactagtgtctttgtaaatgtt |
217 |
Q |
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| T |
13213810 |
ggcggtgttgtgggacctacaaagtgggtcccatatattcaa---tactaccatgcttgaaatttctctctctcttataactagtgtctttgtaaatgtt |
13213906 |
T |
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| Q |
218 |
tgtgtatgtgtaagtttcttcttctatattggaaaagctgcaaataagaacacattaatatatgtctttcactaatagggtaaaaaaccttactcactat |
317 |
Q |
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| T |
13213907 |
tgtgtatgtgtaagtttcttcttctatattggaaaagctgcaaataagaacacattaatatatgtcttacactaatagggtaaaaaaccttactcactat |
13214006 |
T |
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| Q |
318 |
cttaattcttaaaccttggtctttactactgcctctttctctcagctatatgcaccttctt |
378 |
Q |
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| T |
13214007 |
cttaattcttaaaccttggtctttactactgcctctttctctcagctatatgcaccttctt |
13214067 |
T |
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