View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_high_5 (Length: 390)
Name: NF7719_high_5
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 51406028 - 51405665
Alignment:
| Q |
9 |
tggtgttcaaggtcaacctggtctcatacgctattgtgcttcaaacataaaaggtgttgttgaagatgatgttgttgctgagcctgagacaacgatcaag |
108 |
Q |
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| T |
51406028 |
tggtgttcaaggccaacccggtctcatacgctattgtgcttcaaacataaaaggtgttgttgaagatgatgttgttgctgagcctgagacaacgatcaag |
51405929 |
T |
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| Q |
109 |
tgggcaaaggaaaagctgttgaaaattgatccaatcaaacgttgtttgtcgtatgaaattgttgataacaacatgggatttaagtcttatgttgcaacac |
208 |
Q |
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| T |
51405928 |
tgggcaaaggaaaagctgttgaaaattgatccaatcaaacgttgtttgtcgtatgaaattgttgataacaacatgggatttaagtcttatgttgcaacac |
51405829 |
T |
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| Q |
209 |
tgaaagtgcttccaaacgaaggtgatgctaaaagtgcagggtgtgggattgagtgggggtttgtttgtgatccaatagaagggtggacattacaagattt |
308 |
Q |
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| T |
51405828 |
tgaaagtgcttccaaacgaaggtgatgctaaaagtgcagggtgtgggattgagtgggggtttgtttgtgatccaatagaagggtggacattacaagattt |
51405729 |
T |
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| Q |
309 |
caactcttatattgagtactgtcttcagttcatggctaagaagattgaggttgaatgctctgta |
372 |
Q |
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| T |
51405728 |
caactcttatattgagtactgtcttcagttcatggctaagaagattgaggttgaatgctctgta |
51405665 |
T |
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