View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7719_high_9 (Length: 337)
Name: NF7719_high_9
Description: NF7719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7719_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 48 - 329
Target Start/End: Complemental strand, 145586 - 145305
Alignment:
| Q |
48 |
catctatatgtttgctcctcccgtgtaaaacataattctttgacaacttaattgcagagacattatcgtaaaacagtggtgtgggctcttcttcatcata |
147 |
Q |
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| T |
145586 |
catctatatgtttgctcctcccgtgtagaacataattttttgacagcttaatggtagagacattatcacaaaatactggtgtgggatcttcttcatcata |
145487 |
T |
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| Q |
148 |
accaagctctctaattaaccttctcaaccaaatgacttagcaagcacatgatttagctgcaataaactcagctatagtagtggacaacgtaactattggt |
247 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||| |
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| T |
145486 |
tccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgcaataaactcagcttcagtagtagacaaagtaactattggt |
145387 |
T |
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| Q |
248 |
tgttttttagatggccatgaaactgaacctgagcctatcatgaatacatattcagacctacttttcctgacatcttcatctc |
329 |
Q |
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| T |
145386 |
tgttttttggatgaccatgaaattgcacctgagcccatcatgaagacatatccagatgtgcttttcctgtcatcttcatctc |
145305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 48 - 329
Target Start/End: Complemental strand, 153607 - 153326
Alignment:
| Q |
48 |
catctatatgtttgctcctcccgtgtaaaacataattctttgacaacttaattgcagagacattatcgtaaaacagtggtgtgggctcttcttcatcata |
147 |
Q |
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| T |
153607 |
catctatatgtttgctcctcccgtgtagaacataattttttgacagcttaatggtagagacattatcacaaaatactggtgtgggatcttcttcatcata |
153508 |
T |
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| Q |
148 |
accaagctctctaattaaccttctcaaccaaatgacttagcaagcacatgatttagctgcaataaactcagctatagtagtggacaacgtaactattggt |
247 |
Q |
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| T |
153507 |
tccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgcaataaactcagcttcagtagtagacaaagtaactattggt |
153408 |
T |
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| Q |
248 |
tgttttttagatggccatgaaactgaacctgagcctatcatgaatacatattcagacctacttttcctgacatcttcatctc |
329 |
Q |
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| T |
153407 |
tgttttttggatgaccatgaaattgcacctgagcccatcatgaagacatatccagatgtgcttttcctgtcatcttcatctc |
153326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 28006380 - 28006222
Alignment:
| Q |
48 |
catctatatgtttgctcctcccgtgtaaaacataattctttgacaacttaattgcagagacattatcgtaaaacagtggtgtgggctcttcttcatcata |
147 |
Q |
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| T |
28006380 |
catctatatgtttgctcctcccctgtaaaacataattctttgacaacttaattgcagaggcattatcgcaaaacactggtgtgggc---tctttatcata |
28006284 |
T |
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| Q |
148 |
accaagctctctaattaaccttctcaaccaaatgacttagcaagcacatgatttagctgcaa |
209 |
Q |
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| T |
28006283 |
accaagctctctaattaaccttctcaaccaaatgacttagcaagtacatgatgtagctgcaa |
28006222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 328
Target Start/End: Complemental strand, 28006220 - 28006130
Alignment:
| Q |
238 |
aactattggttgttttttagatggccatgaaactgaacctgagcctatcatgaatacatattcagacctacttttcctgacatcttcatct |
328 |
Q |
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| T |
28006220 |
aactattgattgttttttggatgaccatgaaactgcacctgagcccatcatgaggacatattcagacgtacttttcctaacatcttcatct |
28006130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 145642 - 145613
Alignment:
| Q |
20 |
atagataacatcaataacaccatccttgca |
49 |
Q |
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| T |
145642 |
atagataacatcaataacaccatccttgca |
145613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 153663 - 153634
Alignment:
| Q |
20 |
atagataacatcaataacaccatccttgca |
49 |
Q |
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| T |
153663 |
atagataacatcaataacaccatccttgca |
153634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 30967303 - 30967359
Alignment:
| Q |
223 |
agtagtggacaacgtaactattggttgttttttagatggccatgaaactgaacctga |
279 |
Q |
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| T |
30967303 |
agtagtggacaacgtaacaattggttgtttctttgaggaccatgacactgaccctga |
30967359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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